Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0063 ATGGAGAAAGCAAAGCCATATTTGGGAGCAATTGCACTGAGATTTGCTTCTGCAGGAATGTCTATAATCTCTAAAGCTGCTCTAAACCAAGGAATGAACCAACTTGTAACCATTGTTTATCGCTACTCTATTGGTGCCATTGTTGTTGCTCCTTTTGCTTTAGTCTTAGACAGGAAAATACGGCCGAAGATGACGCTTCGTATCTTCGCTAAGATTCTCCTACTCAGCTTACTCGAGCCTGTAATAGCTCAAAGCTTGATTTACTCTGGCACTAAATACACAACTGCAACTTTTGCAACTGCTATGTGCAATATTCTTCCTGCTTTTGCATTTGTAATGGCTTGGATTTGCAGAATGGAGAAGGTGAATGTTAGAAGACTAAGAAGTCAGGCAAAGATTTTAGGCACTTTGGTCACAGTTGGAGGAGCAATGATGATGACTCTTATAAAAGGGCCCATGTTGAATTTGCCTTGGACCAAAGAGAACATCTCTCACTCTTATTCCAGCCTTGCAAACAAGCAAGAGCCTGTTAAGGCTGCCATTGCTATTACCATTTCAAGTATCTGCTCCTCTGCCTTCACCATTCTTCTGGCACATACAATAAGATCATACCCAGCTGAGCTTACACTAACAACTTTGATATGCTTAGCTGGAGCAGTGGAAAGTACTATTTTAGCCTTAGCATTTGAATGGAACAATCCTGCTGCATGGGCCTTACATGCTGATTCCATACTCTTGGCTGCCCTTTATGGTGGAATAGTATCTTCTGGAATTGCTTATTACATCCAAGGAGTGGTGGTGAAGTTAAAAGGACCTGTGTTTGTAACTGCATTCAATCCTCTCAGCATGGTTGTAGTTGCTGTGATTAGTTCGTTCATATTCGCCGAGAGACTGCGCTTAGGAAGGATAATTGGAGCAGCAGTGATAATCATAGGGCTTTACTTGGTTTTGTGGGGTAAGAGCAAAGATAAGCTTCAATCCAAAGTGGGGAATGATGAATTACCAACTTCACACCAAAACTCAACCACCACCAACCCCCATCAGCTCAAGCCTTCAGAATCAACAACATTAACCAACTCTAATGCTTGA 1089 41.97 MEKAKPYLGAIALRFASAGMSIISKAALNQGMNQLVTIVYRYSIGAIVVAPFALVLDRKIRPKMTLRIFAKILLLSLLEPVIAQSLIYSGTKYTTATFATAMCNILPAFAFVMAWICRMEKVNVRRLRSQAKILGTLVTVGGAMMMTLIKGPMLNLPWTKENISHSYSSLANKQEPVKAAIAITISSICSSAFTILLAHTIRSYPAELTLTTLICLAGAVESTILALAFEWNNPAAWALHADSILLAALYGGIVSSGIAYYIQGVVVKLKGPVFVTAFNPLSMVVVAVISSFIFAERLRLGRIIGAAVIIIGLYLVLWGKSKDKLQSKVGNDELPTSHQNSTTTNPHQLKPSESTTLTNSNA 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 407753 411355 - Sed0003530.1 Sed03g0063 705550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0063 362 PANTHER WAT1-RELATED PROTEIN 11 334 IPR030184 GO:0005886(PANTHER)|GO:0016020(InterPro)|GO:0022857(InterPro)
Sed03g0063 362 MobiDBLite consensus disorder prediction 329 362 - -
Sed03g0063 362 Pfam EamA-like transporter family 179 317 IPR000620 GO:0016020(InterPro)
Sed03g0063 362 Pfam EamA-like transporter family 7 146 IPR000620 GO:0016020(InterPro)
Sed03g0063 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 40 148 - -
Sed03g0063 362 SUPERFAMILY Multidrug resistance efflux transporter EmrE 225 322 - -
Sed03g0063 362 MobiDBLite consensus disorder prediction 330 362 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2771 Sed-Chr1:22940492 Sed03g0063 Sed-Chr3:407753 1.20E-159 dispersed
Sed03g0063 Sed-Chr3:407753 Sed07g2469 Sed-Chr7:40415188 4.20E-101 dispersed
Sed03g0062 Sed-Chr3:378573 Sed03g0063 Sed-Chr3:407753 1.90E-102 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0063 - - - 0.0