Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0075 ATGGCGAGTGGAAGAGAAGGTCCAGCAATAGGTATCGATCTCGGCACTACGTACTCTTGCGTCGGCGTGTGGCAACATGATCGTGTCGAGATCATTGCGAACGACCAGGGCAACCGGATGACACCGTCCTATGTTGCCTTCACCGATAGTGAGCGCCTGGTCGGTGATGCGGCCAAGAATCAGGTGGCCATGAACCCTATGAACACCGTGTTTGATGCTAAGCGTTTAATTGGCTTAAGATTAAGCGATTCATCCGTTCAGATTGATATTAAGCTGTGGCCATTCAAAGTCATTTCTGGCCTCAACGACAAGCCCATGATTGTTGTGAACTTCAAGGGTGAGGAGAAACAGTTTTTGGCGGAAGAAATATCTTCTATGGTGCTCAGTAAGATGAAGGAGATTTCCGAGGCATATCTCGGCACAACGGTGAAGAATGCCGTCGTTACTGTCCCGGCCTACTTCAACGATTCGCAGAGACAGGCCACCAAGGATGCTGGTGTCATTTCTGGTCTTAATGTGATGCGTATCATCAATGAACCAACCGCCGCCGCCATCGCTTACGGTCTTGACATGGAGTCCACCAGCACCTGCGAGAAGCATGTTTTGATTTTTGATTTGGGTGGTGGTACCTTTGATGTTTCACTGCTCGCAATCGACGAAGGTATTTTCGAGGTGAAGGTAGTTGCAGGAGACACCCATCTTGGTGGTGAGGATTTTGATAACAGATTGGTTTATCACTTTGTGGAAGAATTCATGAGAAAGAATAACAAAGACATGAGTGGAGACCCGAAGGCTGTGAGGAGGTTGAGGACAGTTTGTGAGAGGGCTAAGCGGATTCTTTCCTCCGCAGCTGAAACTGCAATTGAGATCGACTCTCTGTATGACGGAATCGACTTCTATTCAACCATTACGCGTGCTAAATTTGAGGAACTGAACATGGACCTTTTCAGAAAGTGTATGGAAGCGGTTGAGAAATGTTTGATGGATGCTAAGATGGACAAAAGCTTTGTTCATGATGTTGTTCTTGTTGGTGGCTCCACTAGGATCCCTAAGGTGGAGCAATTGTTGCAGGATTTCTTTCATGGCAAAGAGCTTTGCAAGAGTATCAACCCGGATGAAGCTGTTGCCTATGGAGCTGCAGTTCAGGTTCTGGTGGTTCTCGATGTCACAGCTCTCTCACTTGGTCTTGAAACTTCCGGTGGTGTAACGAGAGTCCTAATTCCAAGGAATACCCCCATCCCCACCAAGAACGAACAACTTTTCACCACATATGCCGACAACCAACAAGGTGCTTTGATTCAAGTCTATGAGGGCGAGAGGGCGAGATCGGTCGACAACAACTTGCTTGGAAAATTTGAGCTGATGGACATCCCGGCAGCTCCAAGAGGTGTTCCTCAGATCATAGTCTGCTTCGACATCGACTCCAATGGTATTCTGAAAGTATCTGCGGAGGATAGAAGCAGCGGCAGTGGGCAGAGGAACGAGATCACGATTTCCATGGACAAGGGGCGGTTGTCGAAAGCAGAGATTGAGAAGTTGGTGGAAGAGGCGGAGAAGTACAAGGCAGACGATGAAGAGCACAGGAAGAAGGTTGAAGCTAAGAAGTCGTTGGAGAAGTACGCTTACTCCATGCGAAGCAGGGTTAGAGAAGAGAGGTTCAGCTGTAAGATAGGGGCAGAAGACAAGAAGAAGTTCGAGGATGGCGTCGAGGAGGCGATCGAGTGGCTTGTGAACAACCCACTTGCAGAGGCCAAGGAGATGGAAGACAAAAAGGAAGAGGTTGAGGGCATTTGCAACCCAATTATTGCAAAGATTTGCATGGCTGATATTGATGGCGATATTCCAGCTCCCAAAATTGATTCATAG 1866 47.96 MASGREGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRMTPSYVAFTDSERLVGDAAKNQVAMNPMNTVFDAKRLIGLRLSDSSVQIDIKLWPFKVISGLNDKPMIVVNFKGEEKQFLAEEISSMVLSKMKEISEAYLGTTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDMESTSTCEKHVLIFDLGGGTFDVSLLAIDEGIFEVKVVAGDTHLGGEDFDNRLVYHFVEEFMRKNNKDMSGDPKAVRRLRTVCERAKRILSSAAETAIEIDSLYDGIDFYSTITRAKFEELNMDLFRKCMEAVEKCLMDAKMDKSFVHDVVLVGGSTRIPKVEQLLQDFFHGKELCKSINPDEAVAYGAAVQVLVVLDVTALSLGLETSGGVTRVLIPRNTPIPTKNEQLFTTYADNQQGALIQVYEGERARSVDNNLLGKFELMDIPAAPRGVPQIIVCFDIDSNGILKVSAEDRSSGSGQRNEITISMDKGRLSKAEIEKLVEEAEKYKADDEEHRKKVEAKKSLEKYAYSMRSRVREERFSCKIGAEDKKKFEDGVEEAIEWLVNNPLAEAKEMEDKKEEVEGICNPIIAKICMADIDGDIPAPKIDS 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 458241 460541 + Sed0014545.1 Sed03g0075 705562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0075 621 PANTHER HEAT SHOCK PROTEIN 70KDA 9 567 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Sed03g0075 621 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Sed03g0075 621 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 384 538 IPR029047 -
Sed03g0075 621 Gene3D Actin; Chain A, domain 4 235 318 - -
Sed03g0075 621 FunFam Heat shock protein 70 10 200 - -
Sed03g0075 621 Gene3D - 71 126 - -
Sed03g0075 621 Coils Coil 510 534 - -
Sed03g0075 621 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 382 534 IPR029047 -
Sed03g0075 621 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Sed03g0075 621 CDD HSPA1-2_6-8-like_NBD 9 382 - -
Sed03g0075 621 FunFam heat shock 70 kDa protein-like 71 126 - -
Sed03g0075 621 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Sed03g0075 621 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Sed03g0075 621 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 532 605 IPR029048 -
Sed03g0075 621 SUPERFAMILY Actin-like ATPase domain 198 382 IPR043129 -
Sed03g0075 621 Pfam Hsp70 protein 9 605 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Sed03g0075 621 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Sed03g0075 621 Gene3D - 535 607 IPR029048 -
Sed03g0075 621 Gene3D - 192 366 - -
Sed03g0075 621 Gene3D - 10 381 - -
Sed03g0075 621 FunFam Heat shock 70 kDa 235 318 - -
Sed03g0075 621 FunFam Heat shock 70 kDa 378 534 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 58 66 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 369 389 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 337 353 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 464 480 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 8 21 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 146 166 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 36 48 - -
Sed03g0075 621 PRINTS 70kDa heat shock protein signature 209 219 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0075 Sed-Chr3:458241 Sed12g2279 Sed-Chr12:33009967 8.40E-259 dispersed
Sed03g0075 Sed-Chr3:458241 Sed03g0077 Sed-Chr3:465813 1.70E-275 proximal
Sed01g2763 Sed-Chr1:22813534 Sed03g0075 Sed-Chr3:458241 1.80E-275 wgd
Sed14g0474 Sed-Chr14:4743015 Sed03g0075 Sed-Chr3:458241 4.80E-265 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0075 K03283 - csv:101210925 961.444