Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0077 | ATGGCGGCGAAGAGTGAAGGTCCGGCCATCGGTATCGATCTCGGTACTACGTACTCTTGTGTTGGAGTTTGGCAGCACGATCGTGTTGAGATTATTGCCAACGACCAGGGCAATCGGACCACGCCCTCCTATGTTGCTTTCACCGACACCGAGCGCCTCATCGGCGATGCTGCCAAGAATCAAGTCGCTATGAATCCCCTCAACACCGTCTTCGATGCGAAGCGGCTGATTGGAAGGAGACTCTCCGATCCCTCCGTCCAGAGCGATGCAAAATTGTGGCCGTTCAAGATCATTGCGGGTCCAGGTGACAAGCCAATGATTGTTGTCAACTACAAGGGCGAAGAGAAGCAGTTCGCTGCTGAGGAAATATCATCCATGGTCCTCACCAAAATGCGTGAGATAGCCGAGGCTTACCTCGGCGTTTCCGTGAATAACGCAGTCGTCACAGTTCCGGCATACTTCAATGACTCTCAGCGTCAAGCCACCAAAGACGCTGGCGTCATTGCCGGCCTCAATGTCATGCGAATCATTAACGAGCCTACAGCTGCAGCCATTGCTTATGGACTCGACAAAAAGGCAAGCAGCGTCGGTGAGAAGAATGTACTGATATTCGATTTAGGTGGAGGAACATTTGATGTATCTCTCCTCACAATTGAGGAAGGTATTTTTGAGGTGAAGGCAACTGCCGGTGATACCCATTTGGGAGGTGAGGATTTTGACAACAGATTGGTTAACCATTTCGTTCAAGAATTCAAGAGGAAGCACAAGAAAGACATCAGTGGAAACCCAAGGGCTCTAAGGAGATTAAGAACTGCTTGTGAAAGGGCTAAAAGAACCCTTTCATCCACGGCCCAAACCACAATCGAGATTGATTCTTTGTATGAAGGAGTTGATTTCTACACATCCATAACTCGTGCCAGATTCGAGGAGCTCAACATGGATCTTTTCAGGAAATGTATGGAGCCAGTTGAGAAATGTTTAAGAGATGCGAAGATGGACAAAAGCACAGTCCATGATGTTGTTCTTGTTGGTGGCTCAACAAGGATTCCAAAAGTGCAGCAGCTTTTGCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGTATTAACCCTGATGAGGCAGTTGCTTATGGGGCAGCTGTTCAAGCTGCTATCTTGAGTGGTGAAGGAAATGAAAAAGTTCAAGATCTTCTTCTTTTGGATGTCACTCCTCTGTCCCTTGGTTTGGAAACTGCAGGTGGTGTAATGACAGTTCTGATACCAAGAAACACGACAATACCCACCAAGAAGGAGCAAGTATTTTCCACATACTCAGACAACCAACCTGGTGTTCTTATCCAGGTCTATGAGGGTGAAAGAACAAGAACCAAAGACAACAACTTGTTGGGCAAATTCGAACTTTCCAGCATTCCTCCAGCTCCAAGAGGCGTTCCCCAGATCACCGTTTGCTTTGACATTGACGCCAACGGTATTCTAAACGTGTCGGCAGAGGATAAGACCACGGGACAAAAGAACAAGATCACCATTACAAACGACAAGGGGAGGTTGTCGAAAGAGGAGATTGAGAAACTGGTGCAGGAAGCAGAGAAGTACAAGGCAGAGGACGAGGATCACAAGAAGAAAGTCGAAGCGAAGAATGCTTTGGAAAACTATGCATACAACATGAGGAACACCATTAGAGATGAAAAGATTGGTGGAAAGCTTGCTCCAGAAGATAAGAAGAAGATTGAAGATGCCGTTGAAGGAGCAATTCAATGGCTAGAGAGCAACCAGTTGGGTGAAGCGGATGAATTTGAGGACAAGATGAAAGAACTTGAGTCCATATGCAACCCCATCATAGCTAAGATGTATCAAGGTGGAGCGGACATGGGCAGCGGTGCAATGGACGAGGATGCTCCTCCATCCGGCCGCGGTGGCGCTGGTCCTAAGATTGAAGAAGTTGATTAA | 1947 | 47.25 | MAAKSEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRLSDPSVQSDAKLWPFKIIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGVSVNNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTSITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSSIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKYKAEDEDHKKKVEAKNALENYAYNMRNTIRDEKIGGKLAPEDKKKIEDAVEGAIQWLESNQLGEADEFEDKMKELESICNPIIAKMYQGGADMGSGAMDEDAPPSGRGGAGPKIEEVD | 648 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 465813 | 468713 | - | Sed0008546.1 | Sed03g0077 | 705564 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0077 | 648 | FunFam | Heat shock 70 kDa protein | 539 | 648 | - | - | |
Sed03g0077 | 648 | Gene3D | - | 192 | 366 | - | - | |
Sed03g0077 | 648 | Gene3D | Substrate Binding Domain Of DNAk; Chain A, domain 1 | 391 | 544 | IPR029047 | - | |
Sed03g0077 | 648 | FunFam | Heat shock 70 kDa protein | 197 | 260 | - | - | |
Sed03g0077 | 648 | FunFam | Heat shock 70 kDa protein | 71 | 126 | - | - | |
Sed03g0077 | 648 | Gene3D | - | 545 | 619 | IPR029048 | - | |
Sed03g0077 | 648 | FunFam | Heat shock 70 kDa | 391 | 545 | - | - | |
Sed03g0077 | 648 | PANTHER | HEAT SHOCK PROTEIN 70KDA | 9 | 578 | IPR013126 | GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro) | |
Sed03g0077 | 648 | CDD | HSPA1-2_6-8-like_NBD | 9 | 387 | - | - | |
Sed03g0077 | 648 | FunFam | Heat shock cognate 70 kDa protein 2 | 319 | 366 | - | - | |
Sed03g0077 | 648 | Gene3D | - | 71 | 126 | - | - | |
Sed03g0077 | 648 | Gene3D | Actin; Chain A, domain 4 | 235 | 318 | - | - | |
Sed03g0077 | 648 | FunFam | Heat shock protein 70 | 10 | 196 | - | - | |
Sed03g0077 | 648 | Pfam | Hsp70 protein | 9 | 618 | IPR013126 | GO:0005524(InterPro)|GO:0140662(InterPro) | |
Sed03g0077 | 648 | SUPERFAMILY | Heat shock protein 70kD (HSP70), C-terminal subdomain | 543 | 622 | IPR029048 | - | |
Sed03g0077 | 648 | Coils | Coil | 514 | 545 | - | - | |
Sed03g0077 | 648 | ProSitePatterns | Heat shock hsp70 proteins family signature 3. | 340 | 354 | IPR018181 | - | |
Sed03g0077 | 648 | SUPERFAMILY | Actin-like ATPase domain | 198 | 388 | IPR043129 | - | |
Sed03g0077 | 648 | SUPERFAMILY | Heat shock protein 70kD (HSP70), peptide-binding domain | 392 | 549 | IPR029047 | - | |
Sed03g0077 | 648 | Gene3D | - | 10 | 384 | - | - | |
Sed03g0077 | 648 | ProSitePatterns | Heat shock hsp70 proteins family signature 2. | 203 | 216 | IPR018181 | - | |
Sed03g0077 | 648 | ProSitePatterns | Heat shock hsp70 proteins family signature 1. | 12 | 19 | IPR018181 | - | |
Sed03g0077 | 648 | SUPERFAMILY | Actin-like ATPase domain | 8 | 191 | IPR043129 | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 209 | 219 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 337 | 353 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 396 | 415 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 8 | 21 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 477 | 493 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 36 | 48 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 146 | 166 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 369 | 389 | - | - | |
Sed03g0077 | 648 | PRINTS | 70kDa heat shock protein signature | 58 | 66 | - | - | |
Sed03g0077 | 648 | FunFam | Heat shock 70 kDa | 235 | 318 | - | - | |
Sed03g0077 | 648 | MobiDBLite | consensus disorder prediction | 620 | 648 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g2763 | Sed-Chr1:22813534 | Sed03g0077 | Sed-Chr3:465813 | 0.00E+00 | dispersed | |
Sed01g2765 | Sed-Chr1:22855631 | Sed03g0077 | Sed-Chr3:465813 | 0.00E+00 | dispersed | |
Sed01g3812 | Sed-Chr1:67292809 | Sed03g0077 | Sed-Chr3:465813 | 1.30E-228 | dispersed | |
Sed03g0077 | Sed-Chr3:465813 | Sed14g0474 | Sed-Chr14:4743015 | 0.00E+00 | dispersed | |
Sed03g0075 | Sed-Chr3:458241 | Sed03g0077 | Sed-Chr3:465813 | 1.70E-275 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0077 | K03283 | - | csv:101211905 | 1221.45 |