Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0077 ATGGCGGCGAAGAGTGAAGGTCCGGCCATCGGTATCGATCTCGGTACTACGTACTCTTGTGTTGGAGTTTGGCAGCACGATCGTGTTGAGATTATTGCCAACGACCAGGGCAATCGGACCACGCCCTCCTATGTTGCTTTCACCGACACCGAGCGCCTCATCGGCGATGCTGCCAAGAATCAAGTCGCTATGAATCCCCTCAACACCGTCTTCGATGCGAAGCGGCTGATTGGAAGGAGACTCTCCGATCCCTCCGTCCAGAGCGATGCAAAATTGTGGCCGTTCAAGATCATTGCGGGTCCAGGTGACAAGCCAATGATTGTTGTCAACTACAAGGGCGAAGAGAAGCAGTTCGCTGCTGAGGAAATATCATCCATGGTCCTCACCAAAATGCGTGAGATAGCCGAGGCTTACCTCGGCGTTTCCGTGAATAACGCAGTCGTCACAGTTCCGGCATACTTCAATGACTCTCAGCGTCAAGCCACCAAAGACGCTGGCGTCATTGCCGGCCTCAATGTCATGCGAATCATTAACGAGCCTACAGCTGCAGCCATTGCTTATGGACTCGACAAAAAGGCAAGCAGCGTCGGTGAGAAGAATGTACTGATATTCGATTTAGGTGGAGGAACATTTGATGTATCTCTCCTCACAATTGAGGAAGGTATTTTTGAGGTGAAGGCAACTGCCGGTGATACCCATTTGGGAGGTGAGGATTTTGACAACAGATTGGTTAACCATTTCGTTCAAGAATTCAAGAGGAAGCACAAGAAAGACATCAGTGGAAACCCAAGGGCTCTAAGGAGATTAAGAACTGCTTGTGAAAGGGCTAAAAGAACCCTTTCATCCACGGCCCAAACCACAATCGAGATTGATTCTTTGTATGAAGGAGTTGATTTCTACACATCCATAACTCGTGCCAGATTCGAGGAGCTCAACATGGATCTTTTCAGGAAATGTATGGAGCCAGTTGAGAAATGTTTAAGAGATGCGAAGATGGACAAAAGCACAGTCCATGATGTTGTTCTTGTTGGTGGCTCAACAAGGATTCCAAAAGTGCAGCAGCTTTTGCAGGATTTCTTCAATGGGAAAGAGCTTTGCAAGAGTATTAACCCTGATGAGGCAGTTGCTTATGGGGCAGCTGTTCAAGCTGCTATCTTGAGTGGTGAAGGAAATGAAAAAGTTCAAGATCTTCTTCTTTTGGATGTCACTCCTCTGTCCCTTGGTTTGGAAACTGCAGGTGGTGTAATGACAGTTCTGATACCAAGAAACACGACAATACCCACCAAGAAGGAGCAAGTATTTTCCACATACTCAGACAACCAACCTGGTGTTCTTATCCAGGTCTATGAGGGTGAAAGAACAAGAACCAAAGACAACAACTTGTTGGGCAAATTCGAACTTTCCAGCATTCCTCCAGCTCCAAGAGGCGTTCCCCAGATCACCGTTTGCTTTGACATTGACGCCAACGGTATTCTAAACGTGTCGGCAGAGGATAAGACCACGGGACAAAAGAACAAGATCACCATTACAAACGACAAGGGGAGGTTGTCGAAAGAGGAGATTGAGAAACTGGTGCAGGAAGCAGAGAAGTACAAGGCAGAGGACGAGGATCACAAGAAGAAAGTCGAAGCGAAGAATGCTTTGGAAAACTATGCATACAACATGAGGAACACCATTAGAGATGAAAAGATTGGTGGAAAGCTTGCTCCAGAAGATAAGAAGAAGATTGAAGATGCCGTTGAAGGAGCAATTCAATGGCTAGAGAGCAACCAGTTGGGTGAAGCGGATGAATTTGAGGACAAGATGAAAGAACTTGAGTCCATATGCAACCCCATCATAGCTAAGATGTATCAAGGTGGAGCGGACATGGGCAGCGGTGCAATGGACGAGGATGCTCCTCCATCCGGCCGCGGTGGCGCTGGTCCTAAGATTGAAGAAGTTGATTAA 1947 47.25 MAAKSEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPLNTVFDAKRLIGRRLSDPSVQSDAKLWPFKIIAGPGDKPMIVVNYKGEEKQFAAEEISSMVLTKMREIAEAYLGVSVNNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGVDFYTSITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGGSTRIPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTKDNNLLGKFELSSIPPAPRGVPQITVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKLVQEAEKYKAEDEDHKKKVEAKNALENYAYNMRNTIRDEKIGGKLAPEDKKKIEDAVEGAIQWLESNQLGEADEFEDKMKELESICNPIIAKMYQGGADMGSGAMDEDAPPSGRGGAGPKIEEVD 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 465813 468713 - Sed0008546.1 Sed03g0077 705564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0077 648 FunFam Heat shock 70 kDa protein 539 648 - -
Sed03g0077 648 Gene3D - 192 366 - -
Sed03g0077 648 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 391 544 IPR029047 -
Sed03g0077 648 FunFam Heat shock 70 kDa protein 197 260 - -
Sed03g0077 648 FunFam Heat shock 70 kDa protein 71 126 - -
Sed03g0077 648 Gene3D - 545 619 IPR029048 -
Sed03g0077 648 FunFam Heat shock 70 kDa 391 545 - -
Sed03g0077 648 PANTHER HEAT SHOCK PROTEIN 70KDA 9 578 IPR013126 GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0140662(InterPro)
Sed03g0077 648 CDD HSPA1-2_6-8-like_NBD 9 387 - -
Sed03g0077 648 FunFam Heat shock cognate 70 kDa protein 2 319 366 - -
Sed03g0077 648 Gene3D - 71 126 - -
Sed03g0077 648 Gene3D Actin; Chain A, domain 4 235 318 - -
Sed03g0077 648 FunFam Heat shock protein 70 10 196 - -
Sed03g0077 648 Pfam Hsp70 protein 9 618 IPR013126 GO:0005524(InterPro)|GO:0140662(InterPro)
Sed03g0077 648 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 622 IPR029048 -
Sed03g0077 648 Coils Coil 514 545 - -
Sed03g0077 648 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Sed03g0077 648 SUPERFAMILY Actin-like ATPase domain 198 388 IPR043129 -
Sed03g0077 648 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 549 IPR029047 -
Sed03g0077 648 Gene3D - 10 384 - -
Sed03g0077 648 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Sed03g0077 648 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Sed03g0077 648 SUPERFAMILY Actin-like ATPase domain 8 191 IPR043129 -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 209 219 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 337 353 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 396 415 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 8 21 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 477 493 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 36 48 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 146 166 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 369 389 - -
Sed03g0077 648 PRINTS 70kDa heat shock protein signature 58 66 - -
Sed03g0077 648 FunFam Heat shock 70 kDa 235 318 - -
Sed03g0077 648 MobiDBLite consensus disorder prediction 620 648 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2763 Sed-Chr1:22813534 Sed03g0077 Sed-Chr3:465813 0.00E+00 dispersed
Sed01g2765 Sed-Chr1:22855631 Sed03g0077 Sed-Chr3:465813 0.00E+00 dispersed
Sed01g3812 Sed-Chr1:67292809 Sed03g0077 Sed-Chr3:465813 1.30E-228 dispersed
Sed03g0077 Sed-Chr3:465813 Sed14g0474 Sed-Chr14:4743015 0.00E+00 dispersed
Sed03g0075 Sed-Chr3:458241 Sed03g0077 Sed-Chr3:465813 1.70E-275 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0077 K03283 - csv:101211905 1221.45