Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0078 | ATGGTTTTCTCTTCAGTTCCTATGTTTCTTGATCCACCCAACTGGCCTTCTCAGCAACCAAATCAGCTCCAAGGAAGTGGCTGTGAGACTAATAATGCTCAACACCTTCCGCCTCAGCCACCGCCCGCCGTTACAGCTGGCGGTGGCAGTGGCGGAGGTGGAGCTGGCTCGATTAGACCTGGCTCAATGACAGATCGAGCCAGATTAGCAAAGATACCGCAACCGGAAGCAGGACTAAAGTGCCCGAGATGCGAATCAACCAACACAAAGTTTTGTTACTTCAACAACTACAGCCTCACTCAGCCACGCCACTTTTGCAAGACGTGCCGACGATACTGGACGAGAGGTGGGGCGATGAGGAGCGTGCCGGTTGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAGCAAAGGAGGGAGCAAAAGGTCAAAATCTCCAGCGGGTTCAAGTACTTCAACCAGCACAGTGTCCTCAAACAGTTGCACAACCGATATCATTAGCCACCAATTGGCTCCTCCACCAACAACCCATTTGCCCTTTTTGGCTCCAAATTTACAAAATCTTACTGATTTTGGAAACTTTGGCTTAAACTTTGAATCCCTTCAAATTCCCAATTCCCTTCCATCATCAACAGGAGAATCATCAATTTTATCAAGTGGAATTGCAGATCATCACCAGTGGAAAATACCCTTTTTTGCAAACTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATAACCAACCAGCTGATTTCATAAATTACCAGCGTTTGTCAAAGCCATTGTTGGACAGTGGATTCAGCACTAATAATAGCATGAAAATCATGGAGGGCACTCAAGGAATTAACAATTTGTCAAGAAATTTCATGGGAATTCAACCAAATGATCAGTTTTGGAACTCAACTTCAACGAAAACAACAGCTGGGAACATTGCTTGGTCAGATCAAATCTCGGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA | 1008 | 45.44 | MVFSSVPMFLDPPNWPSQQPNQLQGSGCETNNAQHLPPQPPPAVTAGGGSGGGGAGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSSKGGSKRSKSPAGSSTSTSTVSSNSCTTDIISHQLAPPPTTHLPFLAPNLQNLTDFGNFGLNFESLQIPNSLPSSTGESSILSSGIADHHQWKIPFFANLHQQNGMYSNFMAEDHNQPADFINYQRLSKPLLDSGFSTNNSMKIMEGTQGINNLSRNFMGIQPNDQFWNSTSTKTTAGNIAWSDQISDHFNSTSSTSHLL | 335 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 485327 | 487093 | + | Sed0007468.1 | Sed03g0078 | 705565 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0078 | 335 | MobiDBLite | consensus disorder prediction | 141 | 158 | - | - | |
Sed03g0078 | 335 | MobiDBLite | consensus disorder prediction | 11 | 34 | - | - | |
Sed03g0078 | 335 | ProSitePatterns | Zinc finger Dof-type signature. | 81 | 117 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g0078 | 335 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 67 | 234 | IPR045174 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0078 | 335 | MobiDBLite | consensus disorder prediction | 120 | 158 | - | - | |
Sed03g0078 | 335 | MobiDBLite | consensus disorder prediction | 1 | 62 | - | - | |
Sed03g0078 | 335 | ProSiteProfiles | Zinc finger Dof-type profile. | 79 | 133 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g0078 | 335 | Pfam | Dof domain, zinc finger | 79 | 133 | IPR003851 | GO:0003677(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0078 | Sed-Chr3:485327 | Sed04g1274 | Sed-Chr4:26722099 | 3.80E-48 | dispersed | |
Sed01g2759 | Sed-Chr1:22714234 | Sed03g0078 | Sed-Chr3:485327 | 1.10E-124 | wgd | |
Sed03g0078 | Sed-Chr3:485327 | Sed07g2483 | Sed-Chr7:40537389 | 1.80E-45 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37702 | PF02701 | zf-Dof | 1.20E-30 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0078 | - | - | - | 0.0 |