Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0078 ATGGTTTTCTCTTCAGTTCCTATGTTTCTTGATCCACCCAACTGGCCTTCTCAGCAACCAAATCAGCTCCAAGGAAGTGGCTGTGAGACTAATAATGCTCAACACCTTCCGCCTCAGCCACCGCCCGCCGTTACAGCTGGCGGTGGCAGTGGCGGAGGTGGAGCTGGCTCGATTAGACCTGGCTCAATGACAGATCGAGCCAGATTAGCAAAGATACCGCAACCGGAAGCAGGACTAAAGTGCCCGAGATGCGAATCAACCAACACAAAGTTTTGTTACTTCAACAACTACAGCCTCACTCAGCCACGCCACTTTTGCAAGACGTGCCGACGATACTGGACGAGAGGTGGGGCGATGAGGAGCGTGCCGGTTGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAGCAAAGGAGGGAGCAAAAGGTCAAAATCTCCAGCGGGTTCAAGTACTTCAACCAGCACAGTGTCCTCAAACAGTTGCACAACCGATATCATTAGCCACCAATTGGCTCCTCCACCAACAACCCATTTGCCCTTTTTGGCTCCAAATTTACAAAATCTTACTGATTTTGGAAACTTTGGCTTAAACTTTGAATCCCTTCAAATTCCCAATTCCCTTCCATCATCAACAGGAGAATCATCAATTTTATCAAGTGGAATTGCAGATCATCACCAGTGGAAAATACCCTTTTTTGCAAACTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATAACCAACCAGCTGATTTCATAAATTACCAGCGTTTGTCAAAGCCATTGTTGGACAGTGGATTCAGCACTAATAATAGCATGAAAATCATGGAGGGCACTCAAGGAATTAACAATTTGTCAAGAAATTTCATGGGAATTCAACCAAATGATCAGTTTTGGAACTCAACTTCAACGAAAACAACAGCTGGGAACATTGCTTGGTCAGATCAAATCTCGGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1008 45.44 MVFSSVPMFLDPPNWPSQQPNQLQGSGCETNNAQHLPPQPPPAVTAGGGSGGGGAGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSSKGGSKRSKSPAGSSTSTSTVSSNSCTTDIISHQLAPPPTTHLPFLAPNLQNLTDFGNFGLNFESLQIPNSLPSSTGESSILSSGIADHHQWKIPFFANLHQQNGMYSNFMAEDHNQPADFINYQRLSKPLLDSGFSTNNSMKIMEGTQGINNLSRNFMGIQPNDQFWNSTSTKTTAGNIAWSDQISDHFNSTSSTSHLL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 485327 487093 + Sed0007468.1 Sed03g0078 705565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0078 335 MobiDBLite consensus disorder prediction 141 158 - -
Sed03g0078 335 MobiDBLite consensus disorder prediction 11 34 - -
Sed03g0078 335 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0078 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 234 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0078 335 MobiDBLite consensus disorder prediction 120 158 - -
Sed03g0078 335 MobiDBLite consensus disorder prediction 1 62 - -
Sed03g0078 335 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0078 335 Pfam Dof domain, zinc finger 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0078 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0078 Sed-Chr3:485327 Sed04g1274 Sed-Chr4:26722099 3.80E-48 dispersed
Sed01g2759 Sed-Chr1:22714234 Sed03g0078 Sed-Chr3:485327 1.10E-124 wgd
Sed03g0078 Sed-Chr3:485327 Sed07g2483 Sed-Chr7:40537389 1.80E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT1G29160 55.2 3.1e-41 166.0
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT1G29160 54.5 2.6e-40 162.9
Sed01g2154 . 12 166 C2C2-Dof Transcription Factor Family AT2G34140 54.7 4.2e-43 172.2
Sed10g0236 . 6 155 C2C2-Dof Transcription Factor Family AT2G34140 53.4 6.9e-38 154.8
Sed04g1274 . 1 127 C2C2-Dof Transcription Factor Family AT2G37590 63.8 1.4e-39 161.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT2G37590 63.8 7.1e-39 159.1
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT2G37590 65.7 2.7e-38 157.1
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 55.5 1.5e-36 151.4
Sed08g0219 . 102 453 C2C2-Dof Transcription Factor Family AT3G47500 52.4 8.0e-86 315.5
Sed01g1076 . 1 133 C2C2-Dof Transcription Factor Family AT5G02460 58.3 7.0e-41 166.0
Sed13g1381 . 1 116 C2C2-Dof Transcription Factor Family AT5G02460 58.1 1.0e-39 162.2
Sed13g1380 . 1 124 C2C2-Dof Transcription Factor Family AT5G02460 57.2 4.3e-38 156.8
Sed01g2759 . 1 135 C2C2-Dof Transcription Factor Family AT5G02460 64.6 2.8e-37 154.1
Sed05g2954 . 46 122 C2C2-Dof Transcription Factor Family AT5G02460 88.3 1.8e-36 151.4
Sed03g0078 . 1 131 C2C2-Dof Transcription Factor Family AT5G02460 62.6 2.3e-36 151.0
Sed13g1380 . 27 198 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed13g1381 . 19 190 C2C2-Dof Transcription Factor Family AT3G55370 50.8 1.6e-39 161.4
Sed04g1274 . 48 133 C2C2-Dof Transcription Factor Family AT3G55370 76.7 1.7e-36 151.4
Sed08g0300 . 28 302 C2C2-Dof Transcription Factor Family AT5G60850 50.2 8.6e-47 185.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013092 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 1 0 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37702 PF02701 zf-Dof 1.20E-30 No_clan Sed TF