Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0078 ATGGTTTTCTCTTCAGTTCCTATGTTTCTTGATCCACCCAACTGGCCTTCTCAGCAACCAAATCAGCTCCAAGGAAGTGGCTGTGAGACTAATAATGCTCAACACCTTCCGCCTCAGCCACCGCCCGCCGTTACAGCTGGCGGTGGCAGTGGCGGAGGTGGAGCTGGCTCGATTAGACCTGGCTCAATGACAGATCGAGCCAGATTAGCAAAGATACCGCAACCGGAAGCAGGACTAAAGTGCCCGAGATGCGAATCAACCAACACAAAGTTTTGTTACTTCAACAACTACAGCCTCACTCAGCCACGCCACTTTTGCAAGACGTGCCGACGATACTGGACGAGAGGTGGGGCGATGAGGAGCGTGCCGGTTGGGGGCGGGTGTCGGCGGTCGAGCAAGAGAAGCAGCAAAGGAGGGAGCAAAAGGTCAAAATCTCCAGCGGGTTCAAGTACTTCAACCAGCACAGTGTCCTCAAACAGTTGCACAACCGATATCATTAGCCACCAATTGGCTCCTCCACCAACAACCCATTTGCCCTTTTTGGCTCCAAATTTACAAAATCTTACTGATTTTGGAAACTTTGGCTTAAACTTTGAATCCCTTCAAATTCCCAATTCCCTTCCATCATCAACAGGAGAATCATCAATTTTATCAAGTGGAATTGCAGATCATCACCAGTGGAAAATACCCTTTTTTGCAAACTTACATCAACAAAATGGGATGTATTCAAATTTCATGGCTGAAGATCATAACCAACCAGCTGATTTCATAAATTACCAGCGTTTGTCAAAGCCATTGTTGGACAGTGGATTCAGCACTAATAATAGCATGAAAATCATGGAGGGCACTCAAGGAATTAACAATTTGTCAAGAAATTTCATGGGAATTCAACCAAATGATCAGTTTTGGAACTCAACTTCAACGAAAACAACAGCTGGGAACATTGCTTGGTCAGATCAAATCTCGGATCATTTCAATTCAACTTCTTCCACTAGCCATCTCTTGTAA 1008 45.44 MVFSSVPMFLDPPNWPSQQPNQLQGSGCETNNAQHLPPQPPPAVTAGGGSGGGGAGSIRPGSMTDRARLAKIPQPEAGLKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGAMRSVPVGGGCRRSSKRSSKGGSKRSKSPAGSSTSTSTVSSNSCTTDIISHQLAPPPTTHLPFLAPNLQNLTDFGNFGLNFESLQIPNSLPSSTGESSILSSGIADHHQWKIPFFANLHQQNGMYSNFMAEDHNQPADFINYQRLSKPLLDSGFSTNNSMKIMEGTQGINNLSRNFMGIQPNDQFWNSTSTKTTAGNIAWSDQISDHFNSTSSTSHLL 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 485327 487093 + Sed0007468.1 Sed03g0078 705565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0078 335 MobiDBLite consensus disorder prediction 141 158 - -
Sed03g0078 335 MobiDBLite consensus disorder prediction 11 34 - -
Sed03g0078 335 ProSitePatterns Zinc finger Dof-type signature. 81 117 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0078 335 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 67 234 IPR045174 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0078 335 MobiDBLite consensus disorder prediction 120 158 - -
Sed03g0078 335 MobiDBLite consensus disorder prediction 1 62 - -
Sed03g0078 335 ProSiteProfiles Zinc finger Dof-type profile. 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0078 335 Pfam Dof domain, zinc finger 79 133 IPR003851 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0078 Sed-Chr3:485327 Sed04g1274 Sed-Chr4:26722099 3.80E-48 dispersed
Sed01g2759 Sed-Chr1:22714234 Sed03g0078 Sed-Chr3:485327 1.10E-124 wgd
Sed03g0078 Sed-Chr3:485327 Sed07g2483 Sed-Chr7:40537389 1.80E-45 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37702 PF02701 zf-Dof 1.20E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0078 - - - 0.0