Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0096 ATGGCGGCAACAGTTTCAACGACCTTTCAGTTTCTAATCTCTCTGTTTTTAATCATGTCGTTCACCGTAGAAGCCAGAGAAATTGCCGGAATTCACGGCGGCGGGCCGTGGCAGAGCGCCCACGCCACGTTCTACGGCGGAAACGACGCCTCCGGCACAATGGGCGGCGCGTGTGGCTACGGCAACTTATACAGCGAAGGGTACGGCGTGAACACGGCGGCGCTAAGCACCGCCCTGTTCAACGACGGCTACAGCTGCGGTGCGTGCTTCGAAATGAAGTGTGTGAACGATCCACAGTGGTGCCACGCTGGCAACCCTTCCATCTTCGTCACCGCCACTAACTTTTGTCCTCCAAATTATGCTCTTCCCAGTGACAATGGCGGCTGGTGTAACCCTCCTCGCCCTCACTTTGACCTCTCCATGCCCATGTTCCTCCGAATTGCTCAGTATCGTGCCGGGATCGTCCCCGTCTCGTTTCGCAGGGTGGCATGCAAGAAAGAGGGAGGGATTCGGTTTACGATGAATGGGTTCAAATACTTCAATTTGGTATTAATAACCAACGTGGCAGGAGCAGGGGATATTGTCAGCGTCAGCATCAAGGGGTCCAGGACAGGCTGGACACGCATGACACGTAATTGGGGTCAAAACTGGCAGTCAAACGCCGTTTTGGTGGGCCAGTCACTTTCCTTTACCGTCAAAGCCAGCGACGGCCGGATTTCAACCTCCTCCAATATTGTTCCGTCCGATTGGCAGTTCGGTCAAACTTTCACCGGCAACAACTTCAGACTCTAA 792 54.29 MAATVSTTFQFLISLFLIMSFTVEAREIAGIHGGGPWQSAHATFYGGNDASGTMGGACGYGNLYSEGYGVNTAALSTALFNDGYSCGACFEMKCVNDPQWCHAGNPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLSMPMFLRIAQYRAGIVPVSFRRVACKKEGGIRFTMNGFKYFNLVLITNVAGAGDIVSVSIKGSRTGWTRMTRNWGQNWQSNAVLVGQSLSFTVKASDGRISTSSNIVPSDWQFGQTFTGNNFRL 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 584840 586403 - Sed0027007.1 Sed03g0096 705583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0096 263 Gene3D - 169 261 IPR036749 -
Sed03g0096 263 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Sed03g0096 263 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Sed03g0096 263 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576(InterPro)
Sed03g0096 263 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576(InterPro)
Sed03g0096 263 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576(InterPro)
Sed03g0096 263 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Sed03g0096 263 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576(InterPro)
Sed03g0096 263 FunFam Expansin 26 165 - -
Sed03g0096 263 FunFam Expansin 169 261 - -
Sed03g0096 263 SUPERFAMILY Barwin-like endoglucanases 16 187 IPR036908 -
Sed03g0096 263 Pfam Expansin C-terminal domain 170 247 IPR007117 -
Sed03g0096 263 PANTHER EXPANSIN-A15 13 261 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 258 IPR007117 -
Sed03g0096 263 CDD DPBB_EXPA_N 36 164 - -
Sed03g0096 263 Gene3D - 23 165 IPR036908 -
Sed03g0096 263 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 169 IPR007112 -
Sed03g0096 263 Pfam Lytic transglycolase 72 159 IPR009009 -
Sed03g0096 263 SMART dpbb_1 72 159 IPR007112 -
Sed03g0096 263 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 215 236 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 67 81 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 244 260 IPR002963 GO:0009664(InterPro)
Sed03g0096 263 PRINTS Expansin signature 94 105 IPR002963 GO:0009664(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0096 Sed-Chr3:584840 Sed05g2978 Sed-Chr5:40441191 5.50E-119 dispersed
Sed14g0493 Sed-Chr14:4867194 Sed03g0096 Sed-Chr3:584840 9.30E-119 wgd
Sed03g0096 Sed-Chr3:584840 Sed04g2835 Sed-Chr4:40265268 1.10E-119 wgd
Sed03g0096 Sed-Chr3:584840 Sed07g2495 Sed-Chr7:40621356 3.60E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0096 - - - 0.0