Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0104 | ATGGAAGTTCCTCCAAGTTTCAGCCATATCAATATTTTAGGTTTGAGCTTGACAATAATGATCATCATCCTCAGCCACTCTCTTCTCAAACTCTTTGCAACTAATTCAACGCCAAATTACACTAATTTGCCCCCTGGCTGCATGGGCTTCCCCTTCATTGGACAGACTCTCAGCTTCCTCAAGCCCCATCATTCTAACTCCATTGGAACCTTTCTTCAACTCCAATCCTCCAGGTTTGGGAAGGTTTTCAAGTCTCATTTATTTGGGTCACCCGCGATAGTGTCGTGTGATCGAGAGCTAAACATGTTCATTCTTCAGAATGACGATAAGCTTTTCAAAGTGAGTTATCCGAAGGCCATGCATGGCATTCTCGGCGCCAATTCTTTGATTATCGCCGAAGGTGACACCCACCGGAAGCTTAGAAACGTCGTTGTTAGCTTCATCAGCTGGTGCAAGTCCAGACCCTCTTTTCTTCATTGCGTGGATAAGCTCTCTGTCTCTTTGATGGACTCATGGAGATCACAAACCCAAGTGCTTTTCAGCAAAGAACTCAAAATGTTTGCTTTGAGTGTTATGGTGAAAGAACTGCTCAGCATCGAAGCGAACGAGTCGATAGGGTCAACGATATTAGAAGAGTTCGAGACGTATATGAAAGGATTTGTCTCCTTGCCTCTAAACCTGCCTAGAACTCCATACTCTAATGCGGTCAAGGCTAGGAGGAGGCTATCTTGCATTGTGAAAGAGATGATGAGAGAGAGGAGAAGAAAATTAGTGATGGGGATGGAAATGGAAATGGAAGGGGCTAATGAGAACTTTCTAGAAGTGATAATGTCAAATTGGAAGCTTGAGGATGAAGAGATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCCACCCTCATGGGATTGATTGTCTATTTTCTTGCAAATTCACCACCTAATATTCTTGCAAAATTAAAGGAAGAACATGAAACCATAAGAATTGGTAAAAGGAATGGAGAATGTCTCAATTTGGAAGATTACAAGCAAATGGAGTTCACATGCAATGTGATATATGAAGCCATGAGATGTGGGAATGTGGTCAAGTTTTTACATAGGGAAGCTCTTAAAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAATTTTCTCAGCAGTTCATCTTGATCCAGCCCTTCATCCAAATCCTCATCAATTCAATCCTTGGAGATGGACGGATGACAAAGAAATGAGCAAAAAAGTGACACCATTTGGTGGAGGGCCAAGGCTTTGTCCAGGGGTTGAGCTTGCCAAACTAGAGATTGCTTTCTTCCTCCATCATCTTGTCCTTAATTATAAGTGGAAGACAAGAGCTGATGAATGTCCACTAGCCTACCCATATGTTAAATTTAAAGGAGACTTGCTCCTTGAGATTGAGCTCTGCTGTTGA | 1461 | 42.16 | MEVPPSFSHINILGLSLTIMIIILSHSLLKLFATNSTPNYTNLPPGCMGFPFIGQTLSFLKPHHSNSIGTFLQLQSSRFGKVFKSHLFGSPAIVSCDRELNMFILQNDDKLFKVSYPKAMHGILGANSLIIAEGDTHRKLRNVVVSFISWCKSRPSFLHCVDKLSVSLMDSWRSQTQVLFSKELKMFALSVMVKELLSIEANESIGSTILEEFETYMKGFVSLPLNLPRTPYSNAVKARRRLSCIVKEMMRERRRKLVMGMEMEMEGANENFLEVIMSNWKLEDEEIVSVVLDILLGGYETTATLMGLIVYFLANSPPNILAKLKEEHETIRIGKRNGECLNLEDYKQMEFTCNVIYEAMRCGNVVKFLHREALKDVKFKDIVIPSGWKVHPIFSAVHLDPALHPNPHQFNPWRWTDDKEMSKKVTPFGGGPRLCPGVELAKLEIAFFLHHLVLNYKWKTRADECPLAYPYVKFKGDLLLEIELCC | 486 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 637283 | 641224 | + | Sed0018863.1 | Sed03g0104 | 705591 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0104 | 486 | PRINTS | E-class P450 group I signature | 76 | 95 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PRINTS | E-class P450 group I signature | 425 | 435 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PRINTS | E-class P450 group I signature | 286 | 303 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PRINTS | E-class P450 group I signature | 393 | 417 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PRINTS | E-class P450 group I signature | 435 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | CDD | CYP90-like | 77 | 483 | - | - | |
| Sed03g0104 | 486 | Gene3D | Cytochrome P450 | 33 | 476 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | FunFam | Cytochrome P450 724B1 | 39 | 483 | - | - | |
| Sed03g0104 | 486 | PRINTS | P450 superfamily signature | 426 | 435 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PRINTS | P450 superfamily signature | 354 | 365 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PRINTS | P450 superfamily signature | 297 | 314 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PRINTS | P450 superfamily signature | 435 | 446 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 428 | 437 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed03g0104 | 486 | SUPERFAMILY | Cytochrome P450 | 41 | 465 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0104 | 486 | PANTHER | CYTOCHROME P450 26 | 42 | 456 | - | GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER) | |
| Sed03g0104 | 486 | Pfam | Cytochrome P450 | 44 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0104 | Sed-Chr3:637283 | Sed07g1699 | Sed-Chr7:15411770 | 9.00E-99 | dispersed | |
| Sed03g0104 | Sed-Chr3:637283 | Sed03g0105 | Sed-Chr3:637283 | 9.00E-216 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0104 | K12639 | - | csv:101215045 | 721.465 |