Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0104 ATGGAAGTTCCTCCAAGTTTCAGCCATATCAATATTTTAGGTTTGAGCTTGACAATAATGATCATCATCCTCAGCCACTCTCTTCTCAAACTCTTTGCAACTAATTCAACGCCAAATTACACTAATTTGCCCCCTGGCTGCATGGGCTTCCCCTTCATTGGACAGACTCTCAGCTTCCTCAAGCCCCATCATTCTAACTCCATTGGAACCTTTCTTCAACTCCAATCCTCCAGGTTTGGGAAGGTTTTCAAGTCTCATTTATTTGGGTCACCCGCGATAGTGTCGTGTGATCGAGAGCTAAACATGTTCATTCTTCAGAATGACGATAAGCTTTTCAAAGTGAGTTATCCGAAGGCCATGCATGGCATTCTCGGCGCCAATTCTTTGATTATCGCCGAAGGTGACACCCACCGGAAGCTTAGAAACGTCGTTGTTAGCTTCATCAGCTGGTGCAAGTCCAGACCCTCTTTTCTTCATTGCGTGGATAAGCTCTCTGTCTCTTTGATGGACTCATGGAGATCACAAACCCAAGTGCTTTTCAGCAAAGAACTCAAAATGTTTGCTTTGAGTGTTATGGTGAAAGAACTGCTCAGCATCGAAGCGAACGAGTCGATAGGGTCAACGATATTAGAAGAGTTCGAGACGTATATGAAAGGATTTGTCTCCTTGCCTCTAAACCTGCCTAGAACTCCATACTCTAATGCGGTCAAGGCTAGGAGGAGGCTATCTTGCATTGTGAAAGAGATGATGAGAGAGAGGAGAAGAAAATTAGTGATGGGGATGGAAATGGAAATGGAAGGGGCTAATGAGAACTTTCTAGAAGTGATAATGTCAAATTGGAAGCTTGAGGATGAAGAGATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCCACCCTCATGGGATTGATTGTCTATTTTCTTGCAAATTCACCACCTAATATTCTTGCAAAATTAAAGGAAGAACATGAAACCATAAGAATTGGTAAAAGGAATGGAGAATGTCTCAATTTGGAAGATTACAAGCAAATGGAGTTCACATGCAATGTGATATATGAAGCCATGAGATGTGGGAATGTGGTCAAGTTTTTACATAGGGAAGCTCTTAAAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAATTTTCTCAGCAGTTCATCTTGATCCAGCCCTTCATCCAAATCCTCATCAATTCAATCCTTGGAGATGGACGGATGACAAAGAAATGAGCAAAAAAGTGACACCATTTGGTGGAGGGCCAAGGCTTTGTCCAGGGGTTGAGCTTGCCAAACTAGAGATTGCTTTCTTCCTCCATCATCTTGTCCTTAATTATAAGTGGAAGACAAGAGCTGATGAATGTCCACTAGCCTACCCATATGTTAAATTTAAAGGAGACTTGCTCCTTGAGATTGAGCTCTGCTGTTGA 1461 42.16 MEVPPSFSHINILGLSLTIMIIILSHSLLKLFATNSTPNYTNLPPGCMGFPFIGQTLSFLKPHHSNSIGTFLQLQSSRFGKVFKSHLFGSPAIVSCDRELNMFILQNDDKLFKVSYPKAMHGILGANSLIIAEGDTHRKLRNVVVSFISWCKSRPSFLHCVDKLSVSLMDSWRSQTQVLFSKELKMFALSVMVKELLSIEANESIGSTILEEFETYMKGFVSLPLNLPRTPYSNAVKARRRLSCIVKEMMRERRRKLVMGMEMEMEGANENFLEVIMSNWKLEDEEIVSVVLDILLGGYETTATLMGLIVYFLANSPPNILAKLKEEHETIRIGKRNGECLNLEDYKQMEFTCNVIYEAMRCGNVVKFLHREALKDVKFKDIVIPSGWKVHPIFSAVHLDPALHPNPHQFNPWRWTDDKEMSKKVTPFGGGPRLCPGVELAKLEIAFFLHHLVLNYKWKTRADECPLAYPYVKFKGDLLLEIELCC 486
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 637283 641224 + Sed0018863.1 Sed03g0104 705591
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0104 486 PRINTS E-class P450 group I signature 76 95 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PRINTS E-class P450 group I signature 425 435 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PRINTS E-class P450 group I signature 286 303 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PRINTS E-class P450 group I signature 393 417 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PRINTS E-class P450 group I signature 435 458 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 CDD CYP90-like 77 483 - -
Sed03g0104 486 Gene3D Cytochrome P450 33 476 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 FunFam Cytochrome P450 724B1 39 483 - -
Sed03g0104 486 PRINTS P450 superfamily signature 426 435 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PRINTS P450 superfamily signature 354 365 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PRINTS P450 superfamily signature 297 314 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PRINTS P450 superfamily signature 435 446 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 428 437 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed03g0104 486 SUPERFAMILY Cytochrome P450 41 465 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0104 486 PANTHER CYTOCHROME P450 26 42 456 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
Sed03g0104 486 Pfam Cytochrome P450 44 464 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0104 Sed-Chr3:637283 Sed07g1699 Sed-Chr7:15411770 9.00E-99 dispersed
Sed03g0104 Sed-Chr3:637283 Sed03g0105 Sed-Chr3:637283 9.00E-216 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0104 K12639 - csv:101215045 721.465