Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0105 ATGCATGGCATTCTCGGCGCCAATTCTTTGATTATCGCCGAAGGTGACACCCACCGGAAGCTTAGAAACGTCGTTGTTAGCTTCATCAGCTGGTGCAAGTCCAGACCCTCTTTTCTTCATTGCGTGGATAAGCTCTCTGTCTCTTTGATGGACTCATGGAGATCACAAACCCAAGTGCTTTTCAGCAAAGAACTCAAAATGTTTGCTTTGAGTGTTATGGTGAAAGAACTGCTCAGCATCGAAGCGAACGAGTCGATAGGGTCAACGATATTAGAAGAGTTCGAGACGTATATGAAAGGATTTGTCTCCTTGCCTCTAAACCTGCCTAGAACTCCATACTCTAATGCGGTCAAGGCTAGGAGGAGGCTATCTTGCATTGTGAAAGAGATGATGAGAGAGAGGAGAAGAAAATTAGTGATGGGGATGGAAATGGAAATGGAAGGGGCTAATGAGAACTTTCTAGAAGTGATAATGTCAAATTGGAAGCTTGAGGATGAAGAGATTGTGAGTGTTGTGTTGGACATATTGCTTGGAGGTTATGAGACAACAGCCACCCTCATGGGATTGATTGTCTATTTTCTTGCAAATTCACCACCTAATATTCTTGCAAAATTAAAGGAAGAACATGAAACCATAAGAATTGGTAAAAGGAATGGAGAATGTCTCAATTTGGAAGATTACAAGCAAATGGAGTTCACATGCAATGTGATATATGAAGCCATGAGATGTGGGAATGTGGTCAAGTTTTTACATAGGGAAGCTCTTAAAGATGTCAAATTCAAAGATATTGTCATACCCTCTGGATGGAAAGTTCATCCAATTTTCTCAGCAGTTCATCTTGATCCAGCCCTTCATCCAAATCCTCATCAATTCAATCCTTGGAGATGGACGGATGACAAAGAAATGAGCAAAAAAGTGACACCATTTGGTGGAGGGCCAAGGCTTTGTCCAGGGGTTGAGCTTGCCAAACTAGAGATTGCTTTCTTCCTCCATCATCTTGTCCTTAATTATAAGTGGAAGACAAGAGCTGATGAATGTCCACTAGCCTACCCATATGTTAAATTTAAAGGAGACTTGCTCCTTGAGATTGAGCTCTGCTGTTGA 1104 41.76 MHGILGANSLIIAEGDTHRKLRNVVVSFISWCKSRPSFLHCVDKLSVSLMDSWRSQTQVLFSKELKMFALSVMVKELLSIEANESIGSTILEEFETYMKGFVSLPLNLPRTPYSNAVKARRRLSCIVKEMMRERRRKLVMGMEMEMEGANENFLEVIMSNWKLEDEEIVSVVLDILLGGYETTATLMGLIVYFLANSPPNILAKLKEEHETIRIGKRNGECLNLEDYKQMEFTCNVIYEAMRCGNVVKFLHREALKDVKFKDIVIPSGWKVHPIFSAVHLDPALHPNPHQFNPWRWTDDKEMSKKVTPFGGGPRLCPGVELAKLEIAFFLHHLVLNYKWKTRADECPLAYPYVKFKGDLLLEIELCC 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 637283 641224 + Sed0018863.2 Sed03g0105 705592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0105 367 PRINTS P450 superfamily signature 307 316 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PRINTS P450 superfamily signature 316 327 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PRINTS P450 superfamily signature 178 195 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PRINTS P450 superfamily signature 235 246 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 Pfam Cytochrome P450 9 345 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 Gene3D Cytochrome P450 1 357 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 309 318 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed03g0105 367 SUPERFAMILY Cytochrome P450 5 346 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PRINTS E-class P450 group I signature 274 298 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PRINTS E-class P450 group I signature 167 184 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PRINTS E-class P450 group I signature 306 316 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PRINTS E-class P450 group I signature 316 339 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0105 367 PANTHER CYTOCHROME P450 26 2 337 - GO:0004497(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0105 Sed-Chr3:637283 Sed07g1699 Sed-Chr7:15411770 2.90E-73 dispersed
Sed03g0104 Sed-Chr3:637283 Sed03g0105 Sed-Chr3:637283 9.00E-216 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0105 K12639 - csv:101215045 570.852