Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0116 | ATGGGATCCAGTAATGAGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTTGATCCGAAGCAGATCTTTGTTGGGCCAAGGATTGGGGAGGGTGCGCATGGCAAAGTGCACAAGGGGAAATACAAAGACCAAACTGTTGCTATTAAAATAATTCGAAGAGGTGAAAGTCCAGAAGAAATTGCAAAAACTGCGGCACGCTTTGCTCGAGAGGTTGCAATGTTATCCAAAGTTCAGCACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACCGAGCTTCTTTTAGGCGGTACATTACGAAAATACTTGTTGAGTATACGGCCAAGGTGCTTGGACTTGCTTGAAGCAGCTGGCTTTGCGCTCGATATTGCACGTGCAATGGAATGCCTGCATTGCCATGGGATCATTCACCGTGATCTCAAACCTGAAAATTTGATCTTGACCGAAGACCACAAAACTGTTAAGCTTATAGACTTTGGTCTGGCTAGAGAAGAGTCTGTAACAGAGATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACGGTCACTTTAAGAAATGGAGAGAAGAAGCATTACAATCATAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTGCCCAAAATAAGTTGCCTTTCGAAGGCATGTCGAATCTACAAGCGGCGTATGCAGCTGCGTTTAAGAATTTACGACCCAATGCCGAGAACCTCCCAGAGGATTTTTCCCCGATAATAACTTCGTGCTGGATGGAGGATCCGAATGCTCGGCCTAACTTCAGCCAAATCATACAAATGCTCTTGAAATATCTATCCACCATTCCACAACCAGAGTGTGTTACACCACCAACAATGCACCCACCTGAGAATGCAGTGCTGCCACCAGAGTCTCCCGGTACGAGTTCTTTGATGGCGGCCACAAGACATGGCACCGGGGAAGTCTCACACGGCGCGACGGAACAGAATTCTAGCAGTTTCTTCTCCTGTTTTGCTGTTTGTGTTCTTGGGTCGGTTGAACTTTTGTGCCAAATTGATGGGTTTTGTATAATTTTTCAATGCTTAGCTTATTTGGGGCAACCGCTCATACAGAGGATTTGTCATGGCTTCGATTTTTGTTTTGGATATATTTCATCTCATTCTCACAGGTCTTGGATCTTTGATAGCCGAACAATTGCAAGAAAAGTCAGGAACATCAGTCAATCTTCTTCACAAGTAATTAAAGATTGCGGCGCAAAACGAGAATGTCCAAACTGTCACTTTATTATTGATAACACAGATGTTTCTCTTGAATGGCCGGGTTTGCCTGTTGGTGTTAAGTTTGATCCAACTAATGAAGAAATAATGGATCACTTAGCGGCGAAGTGTGCCATCGGTAACTTAAGGCCACATGCATTAATTGATGAGTTCATTCCCACACTAGAAACAGATCAAGGAATTTGCTACACTCATCCAGAAAATCTCCCAGGTGCTAGTAAAGATGGAAATGATGTTCATTTCTTTCACAAAACTAGCAATGCATATGCCAAGGGTCAAAGAAAGCGTCGCAAGATTGAAAGCGAAGATAGTTCAAGCATGGAGCATTTTTGCTGGCACAAGACAGGGAAGACCAAAGCTGTGATAGAAAATGGTGTTCATAAGGGATGGAAGAAGATCTTCTCTCTGTACAGAAGTTTGAAAGGAGGTTCGAAGCCCGAAAAGTCTAGCTGGGCGAGACATCAATATCATTTGGGAACCGAAGAAGATGAGAAGGAAGGCGAATACGTTGTGTCTAAGATTTCTTATCAGCAACCAAAGCAATCTAGTAATAGCAATGGTAATATGCTCATTGAGGATTTTGATGCTTTGCTCCATCAAACTAGTCCTAGAACTCCGAAGCCAAATCATCCAATTCCGCCTCGATCGGGAAAATCATTTGTCTCCAGTGCTGTTGCTGATAATGGTCTGCCTGAATCATTTGCAAAGGAAGAAGAGTTGACTCCAGAAACATCTCATATTTCTTATCCTAATATTTCATCGGAGAACGACGTGGGGTACCCGGCATGGTTGGCTAGACAATCTCATGCTATAGATGATGTTGAGTTGTATTGCTTGGAAGACAACTTATTGTGCAATGAAGTCATGGATTCTAGTGCTTCTATAAGTAACAACCGACTAAACCTAACACCTTTCCCCCTCTCTGGTAGTGATGCTTGCCACGAGATTGCGAACGGTAACGCTCCATGTGGAATTGCAGAGCTGGAGAACCTTGAATTGGATACTCCACCTGATTTTCACCCTGCAGACCTTCATTTTGGTTCTCGAGACAGCATTTTTGACTGA | 2373 | 43.24 | MGSSNELCSKEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQTVAIKIIRRGESPEEIAKTAARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDLLEAAGFALDIARAMECLHCHGIIHRDLKPENLILTEDHKTVKLIDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIAQNKLPFEGMSNLQAAYAAAFKNLRPNAENLPEDFSPIITSCWMEDPNARPNFSQIIQMLLKYLSTIPQPECVTPPTMHPPENAVLPPESPGTSSLMAATRHGTGEVSHGATEQNSSSFFSCFAVCVLGSVELLCQIDGFCIIFQCLAYLGQPLIQRICHGFDFCFGYISSHSHRSWIFDSRTIARKVRNISQSSSQVIKDCGAKRECPNCHFIIDNTDVSLEWPGLPVGVKFDPTNEEIMDHLAAKCAIGNLRPHALIDEFIPTLETDQGICYTHPENLPGASKDGNDVHFFHKTSNAYAKGQRKRRKIESEDSSSMEHFCWHKTGKTKAVIENGVHKGWKKIFSLYRSLKGGSKPEKSSWARHQYHLGTEEDEKEGEYVVSKISYQQPKQSSNSNGNMLIEDFDALLHQTSPRTPKPNHPIPPRSGKSFVSSAVADNGLPESFAKEEELTPETSHISYPNISSENDVGYPAWLARQSHAIDDVELYCLEDNLLCNEVMDSSASISNNRLNLTPFPLSGSDACHEIANGNAPCGIAELENLELDTPPDFHPADLHFGSRDSIFD | 790 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 718063 | 727759 | - | Sed0023923.1 | Sed03g0116 | 705603 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0116 | 790 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 145 | 157 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0116 | 790 | Gene3D | Transferase(Phosphotransferase) domain 1 | 106 | 297 | - | - | |
Sed03g0116 | 790 | FunFam | NAC domain-containing protein 8 | 461 | 617 | - | - | |
Sed03g0116 | 790 | SMART | serkin_6 | 25 | 289 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0116 | 790 | Gene3D | Phosphorylase Kinase; domain 1 | 13 | 104 | - | - | |
Sed03g0116 | 790 | SUPERFAMILY | NAC domain | 437 | 613 | IPR036093 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g0116 | 790 | SUPERFAMILY | Protein kinase-like (PK-like) | 17 | 314 | IPR011009 | - | |
Sed03g0116 | 790 | PANTHER | NAC DOMAIN-CONTAINING PROTEIN 73 | 399 | 788 | IPR044799 | GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER) | |
Sed03g0116 | 790 | ProSiteProfiles | NAC domain profile. | 452 | 613 | IPR003441 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g0116 | 790 | Gene3D | NAC domain | 461 | 618 | IPR036093 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g0116 | 790 | ProSiteProfiles | Protein kinase domain profile. | 25 | 289 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0116 | 790 | ProSitePatterns | Protein kinases ATP-binding region signature. | 31 | 52 | IPR017441 | GO:0005524(InterPro) | |
Sed03g0116 | 790 | Pfam | No apical meristem (NAM) protein | 453 | 594 | IPR003441 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Sed03g0116 | 790 | Pfam | Protein tyrosine and serine/threonine kinase | 30 | 285 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0116 | 790 | CDD | STKc_MAP3K-like | 31 | 285 | - | - | |
Sed03g0116 | 790 | FunFam | Kinase suppressor of Ras 1 | 14 | 104 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0116 | Sed-Chr3:718063 | Sed12g2475 | Sed-Chr12:34347505 | 3.90E-144 | dispersed | |
Sed08g1415 | Sed-Chr8:28795625 | Sed03g0116 | Sed-Chr3:718063 | 1.20E-148 | transposed | |
Sed11g1894 | Sed-Chr11:33481543 | Sed03g0116 | Sed-Chr3:718063 | 1.90E-192 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37704 | PF07714 | PK_Tyr_Ser-Thr | 6.00E-55 | CL0016 | Sed | TF | |
78841 | PF07714 | PK_Tyr_Ser-Thr | 6.00E-55 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0116 | - | - | - | 0.0 |