Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0116 ATGGGATCCAGTAATGAGTTATGTTCAAAAGAGTTTGATTTGGATGCTAAGTGGCTGGTTGATCCGAAGCAGATCTTTGTTGGGCCAAGGATTGGGGAGGGTGCGCATGGCAAAGTGCACAAGGGGAAATACAAAGACCAAACTGTTGCTATTAAAATAATTCGAAGAGGTGAAAGTCCAGAAGAAATTGCAAAAACTGCGGCACGCTTTGCTCGAGAGGTTGCAATGTTATCCAAAGTTCAGCACAAGAATCTTGCAAAGTTTATAGGTGCTTGCAAGGAGCCTATTATGGTGATAGTGACCGAGCTTCTTTTAGGCGGTACATTACGAAAATACTTGTTGAGTATACGGCCAAGGTGCTTGGACTTGCTTGAAGCAGCTGGCTTTGCGCTCGATATTGCACGTGCAATGGAATGCCTGCATTGCCATGGGATCATTCACCGTGATCTCAAACCTGAAAATTTGATCTTGACCGAAGACCACAAAACTGTTAAGCTTATAGACTTTGGTCTGGCTAGAGAAGAGTCTGTAACAGAGATGATGACAGCTGAAACTGGGACTTACAGATGGATGGCTCCAGAGCTATACAGTACGGTCACTTTAAGAAATGGAGAGAAGAAGCATTACAATCATAAGGTGGATGTTTACAGCTTTGGAATTGTATTCTGGGAGATTGCCCAAAATAAGTTGCCTTTCGAAGGCATGTCGAATCTACAAGCGGCGTATGCAGCTGCGTTTAAGAATTTACGACCCAATGCCGAGAACCTCCCAGAGGATTTTTCCCCGATAATAACTTCGTGCTGGATGGAGGATCCGAATGCTCGGCCTAACTTCAGCCAAATCATACAAATGCTCTTGAAATATCTATCCACCATTCCACAACCAGAGTGTGTTACACCACCAACAATGCACCCACCTGAGAATGCAGTGCTGCCACCAGAGTCTCCCGGTACGAGTTCTTTGATGGCGGCCACAAGACATGGCACCGGGGAAGTCTCACACGGCGCGACGGAACAGAATTCTAGCAGTTTCTTCTCCTGTTTTGCTGTTTGTGTTCTTGGGTCGGTTGAACTTTTGTGCCAAATTGATGGGTTTTGTATAATTTTTCAATGCTTAGCTTATTTGGGGCAACCGCTCATACAGAGGATTTGTCATGGCTTCGATTTTTGTTTTGGATATATTTCATCTCATTCTCACAGGTCTTGGATCTTTGATAGCCGAACAATTGCAAGAAAAGTCAGGAACATCAGTCAATCTTCTTCACAAGTAATTAAAGATTGCGGCGCAAAACGAGAATGTCCAAACTGTCACTTTATTATTGATAACACAGATGTTTCTCTTGAATGGCCGGGTTTGCCTGTTGGTGTTAAGTTTGATCCAACTAATGAAGAAATAATGGATCACTTAGCGGCGAAGTGTGCCATCGGTAACTTAAGGCCACATGCATTAATTGATGAGTTCATTCCCACACTAGAAACAGATCAAGGAATTTGCTACACTCATCCAGAAAATCTCCCAGGTGCTAGTAAAGATGGAAATGATGTTCATTTCTTTCACAAAACTAGCAATGCATATGCCAAGGGTCAAAGAAAGCGTCGCAAGATTGAAAGCGAAGATAGTTCAAGCATGGAGCATTTTTGCTGGCACAAGACAGGGAAGACCAAAGCTGTGATAGAAAATGGTGTTCATAAGGGATGGAAGAAGATCTTCTCTCTGTACAGAAGTTTGAAAGGAGGTTCGAAGCCCGAAAAGTCTAGCTGGGCGAGACATCAATATCATTTGGGAACCGAAGAAGATGAGAAGGAAGGCGAATACGTTGTGTCTAAGATTTCTTATCAGCAACCAAAGCAATCTAGTAATAGCAATGGTAATATGCTCATTGAGGATTTTGATGCTTTGCTCCATCAAACTAGTCCTAGAACTCCGAAGCCAAATCATCCAATTCCGCCTCGATCGGGAAAATCATTTGTCTCCAGTGCTGTTGCTGATAATGGTCTGCCTGAATCATTTGCAAAGGAAGAAGAGTTGACTCCAGAAACATCTCATATTTCTTATCCTAATATTTCATCGGAGAACGACGTGGGGTACCCGGCATGGTTGGCTAGACAATCTCATGCTATAGATGATGTTGAGTTGTATTGCTTGGAAGACAACTTATTGTGCAATGAAGTCATGGATTCTAGTGCTTCTATAAGTAACAACCGACTAAACCTAACACCTTTCCCCCTCTCTGGTAGTGATGCTTGCCACGAGATTGCGAACGGTAACGCTCCATGTGGAATTGCAGAGCTGGAGAACCTTGAATTGGATACTCCACCTGATTTTCACCCTGCAGACCTTCATTTTGGTTCTCGAGACAGCATTTTTGACTGA 2373 43.24 MGSSNELCSKEFDLDAKWLVDPKQIFVGPRIGEGAHGKVHKGKYKDQTVAIKIIRRGESPEEIAKTAARFAREVAMLSKVQHKNLAKFIGACKEPIMVIVTELLLGGTLRKYLLSIRPRCLDLLEAAGFALDIARAMECLHCHGIIHRDLKPENLILTEDHKTVKLIDFGLAREESVTEMMTAETGTYRWMAPELYSTVTLRNGEKKHYNHKVDVYSFGIVFWEIAQNKLPFEGMSNLQAAYAAAFKNLRPNAENLPEDFSPIITSCWMEDPNARPNFSQIIQMLLKYLSTIPQPECVTPPTMHPPENAVLPPESPGTSSLMAATRHGTGEVSHGATEQNSSSFFSCFAVCVLGSVELLCQIDGFCIIFQCLAYLGQPLIQRICHGFDFCFGYISSHSHRSWIFDSRTIARKVRNISQSSSQVIKDCGAKRECPNCHFIIDNTDVSLEWPGLPVGVKFDPTNEEIMDHLAAKCAIGNLRPHALIDEFIPTLETDQGICYTHPENLPGASKDGNDVHFFHKTSNAYAKGQRKRRKIESEDSSSMEHFCWHKTGKTKAVIENGVHKGWKKIFSLYRSLKGGSKPEKSSWARHQYHLGTEEDEKEGEYVVSKISYQQPKQSSNSNGNMLIEDFDALLHQTSPRTPKPNHPIPPRSGKSFVSSAVADNGLPESFAKEEELTPETSHISYPNISSENDVGYPAWLARQSHAIDDVELYCLEDNLLCNEVMDSSASISNNRLNLTPFPLSGSDACHEIANGNAPCGIAELENLELDTPPDFHPADLHFGSRDSIFD 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 718063 727759 - Sed0023923.1 Sed03g0116 705603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0116 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0116 790 Gene3D Transferase(Phosphotransferase) domain 1 106 297 - -
Sed03g0116 790 FunFam NAC domain-containing protein 8 461 617 - -
Sed03g0116 790 SMART serkin_6 25 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0116 790 Gene3D Phosphorylase Kinase; domain 1 13 104 - -
Sed03g0116 790 SUPERFAMILY NAC domain 437 613 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0116 790 SUPERFAMILY Protein kinase-like (PK-like) 17 314 IPR011009 -
Sed03g0116 790 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 399 788 IPR044799 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)
Sed03g0116 790 ProSiteProfiles NAC domain profile. 452 613 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0116 790 Gene3D NAC domain 461 618 IPR036093 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0116 790 ProSiteProfiles Protein kinase domain profile. 25 289 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0116 790 ProSitePatterns Protein kinases ATP-binding region signature. 31 52 IPR017441 GO:0005524(InterPro)
Sed03g0116 790 Pfam No apical meristem (NAM) protein 453 594 IPR003441 GO:0003677(InterPro)|GO:0006355(InterPro)
Sed03g0116 790 Pfam Protein tyrosine and serine/threonine kinase 30 285 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0116 790 CDD STKc_MAP3K-like 31 285 - -
Sed03g0116 790 FunFam Kinase suppressor of Ras 1 14 104 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0116 Sed-Chr3:718063 Sed12g2475 Sed-Chr12:34347505 3.90E-144 dispersed
Sed08g1415 Sed-Chr8:28795625 Sed03g0116 Sed-Chr3:718063 1.20E-148 transposed
Sed11g1894 Sed-Chr11:33481543 Sed03g0116 Sed-Chr3:718063 1.90E-192 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37704 PF07714 PK_Tyr_Ser-Thr 6.00E-55 CL0016 Sed TF
78841 PF07714 PK_Tyr_Ser-Thr 6.00E-55 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0116 - - - 0.0