Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0120 ATGGCTTCTTCAAGCTACTCCTCAAGCTCTCCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCAGACTGCATATTTGCACCCTACTTTCCTCCCGAAGAGCCAACCAAATTCGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCAACGAGGTCCAGCCACACCAGCGCGAGGACATGGTCAATTCTCTAGCCTACGAGGCCGAGGCTCGCATGAAAGACCCCGTCTACGGCTGCGTCGGGGCCATCTCCATGCTGCAGCGACAAGTCATTCACCTGCAGAAGGAACTCGACGCTACAAACGCTGATTTGGTACGATACTCACAATTTGGAAGGAGGGCGCCTGCGGGTTCGGGGAGTCGACGTCACTCTGGCGTTTGTTTTGTTTCTCCCTCAAATAACAATGAACATGGTGACCATCCTTATTGCCATGATAAAGAGGAAGGGAATTGA 474 50.84 MASSSYSSSSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDMVNSLAYEAEARMKDPVYGCVGAISMLQRQVIHLQKELDATNADLVRYSQFGRRAPAGSGSRRHSGVCFVSPSNNNEHGDHPYCHDKEEGN 157
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 760565 762064 + Sed0011113.1 Sed03g0120 705607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0120 157 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Sed03g0120 157 Coils Coil 90 110 - -
Sed03g0120 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 119 - -
Sed03g0120 157 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Sed03g0120 157 MobiDBLite consensus disorder prediction 120 157 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0120 Sed-Chr3:760565 Sed06g0520 Sed-Chr6:4546939 3.70E-54 dispersed
Sed03g0119 Sed-Chr3:759494 Sed03g0120 Sed-Chr3:760565 8.70E-88 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37706 PF03195 LOB 9.90E-42 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0120 - - - 0.0