Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0120 | ATGGCTTCTTCAAGCTACTCCTCAAGCTCTCCATGTGCAGCATGCAAATTCCTAAGAAGAAAATGCTTAGCAGACTGCATATTTGCACCCTACTTTCCTCCCGAAGAGCCAACCAAATTCGCCAATGTTCACAAGATCTTTGGAGCCAGCAATGTGAGCAAGCTCCTCAACGAGGTCCAGCCACACCAGCGCGAGGACATGGTCAATTCTCTAGCCTACGAGGCCGAGGCTCGCATGAAAGACCCCGTCTACGGCTGCGTCGGGGCCATCTCCATGCTGCAGCGACAAGTCATTCACCTGCAGAAGGAACTCGACGCTACAAACGCTGATTTGGTACGATACTCACAATTTGGAAGGAGGGCGCCTGCGGGTTCGGGGAGTCGACGTCACTCTGGCGTTTGTTTTGTTTCTCCCTCAAATAACAATGAACATGGTGACCATCCTTATTGCCATGATAAAGAGGAAGGGAATTGA | 474 | 50.84 | MASSSYSSSSPCAACKFLRRKCLADCIFAPYFPPEEPTKFANVHKIFGASNVSKLLNEVQPHQREDMVNSLAYEAEARMKDPVYGCVGAISMLQRQVIHLQKELDATNADLVRYSQFGRRAPAGSGSRRHSGVCFVSPSNNNEHGDHPYCHDKEEGN | 157 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 760565 | 762064 | + | Sed0011113.1 | Sed03g0120 | 705607 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0120 | 157 | Pfam | Lateral organ boundaries (LOB) domain | 11 | 108 | IPR004883 | - | |
Sed03g0120 | 157 | Coils | Coil | 90 | 110 | - | - | |
Sed03g0120 | 157 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 9 | 119 | - | - | |
Sed03g0120 | 157 | ProSiteProfiles | LOB domain profile. | 10 | 111 | IPR004883 | - | |
Sed03g0120 | 157 | MobiDBLite | consensus disorder prediction | 120 | 157 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0120 | Sed-Chr3:760565 | Sed06g0520 | Sed-Chr6:4546939 | 3.70E-54 | dispersed | |
Sed03g0119 | Sed-Chr3:759494 | Sed03g0120 | Sed-Chr3:760565 | 8.70E-88 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37706 | PF03195 | LOB | 9.90E-42 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0120 | - | - | - | 0.0 |