Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0133 ATGGCGAATTCTTCAGAAAAAAGATATCCACTGAATGCAAAGGATTATAACTTGCAAGAAGAAGTTGGTGAAGGCGTCAGTGCCACTGTGTACAAGGCACTGTGCATTCCACTCGATGAGGTCGTCGCGATAAAGGTTCTTGATTTGGAGAAGTGCAACAATGACCTAGATGGTATTCGACGAGAGGTTCAAACAATGACTCTGATTAATCATCCAAATTTATTAAAAGCACATTGTTCGTTCATTACTGGTCACCACCTCTGGGTTGTGATGCCATACATGTCTGGGGGATCTTGTCTTCATATTATGAAATCTGCCTATCAAGAAGGTTTTGATGAGCCTGTGATAGCTGCCCTATTGCGGGAGGTTCTGAAAGCTCTTGTGTATCTTCATGCTCATGGCCACATCCATAGAGATGTGAAGGCTGGGAATATTTTGCTTGATTTTAATGGTACAGTCAAGTTAGCTGATTTTGGAGTCTCAGCTGGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACTTTTGTTGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAGCTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTGATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAAATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACGTGCCTGGTGAAAGATCCAAAGAAACGACCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAACATGTCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGAGGGCCTTGATCCATTAGGGGATCGTTTTAAGAAGCTAAAGGCGAAAGAGGCTGATCTTCTGGGGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCGAACATAGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAGGAATAATGAATTTAGCTTCCCAGTAGAGGGTTCACCCCTTGAAAGGCTGAATCACTCAACTGCTGCAGCTAATCAGGAGGATGGTTTCAATGATCTTCACGATTTGGAGAGTTCCCTTGCTTCATTTCCCATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATTAGCACGGACACTGTAAAGCCATTGGGAAGAGAAAATGGAAGAATTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTACAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCCAAAAGGATTACTGTAGATGGTGATAGGGATCATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATACCGTCAAAAAAGAGATACAATTAACGTTTCATCTGTTGAGGATACATCAGATGGAACCTTTGTTCAACGGAAGGGCCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCGAAGGGTCCAATGACAGGCTCATTTAGCCCCGTTTGTGGAGGGACGTTAAGTCCAACATCCCTGAACCTTACGCCTGCTCTACTCCTCCCATCAATGCAGTGCATTTTGCAGCAAAACATCCTGCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAATGCCTGGCAAGAATCTAGATGCATCAGAGACGGTCACCAGTGACCTTCTGCAGATACCACCAACATCCTTGAGGGAAAGAGAGCTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATAATCTTGTCGAGGAATTGGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAGGACACAATGACTTCCATGGCAAATAA 2004 42.27 MANSSEKRYPLNAKDYNLQEEVGEGVSATVYKALCIPLDEVVAIKVLDLEKCNNDLDGIRREVQTMTLINHPNLLKAHCSFITGHHLWVVMPYMSGGSCLHIMKSAYQEGFDEPVIAALLREVLKALVYLHAHGHIHRDVKAGNILLDFNGTVKLADFGVSAGMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHVRSVDYLARTILEGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNRNNEFSFPVEGSPLERLNHSTAAANQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDTVKPLGRENGRIEGESSGQSGSLPRHYMSENKRSYSGSLISDNAVSPKRITVDGDRDHLQSKLPSERNYSGPLLYRQKRDTINVSSVEDTSDGTFVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTLSPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKYLEQMPGKNLDASETVTSDLLQIPPTSLRERELQSQVVHLQQRIDNLVEELEKQKLKNAEFEGHNDFHGK 667
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 849643 862514 - Sed0014717.1 Sed03g0133 705620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0133 667 SUPERFAMILY Protein kinase-like (PK-like) 13 294 IPR011009 -
Sed03g0133 667 FunFam serine/threonine-protein kinase BLUS1 isoform X1 97 330 - -
Sed03g0133 667 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0133 667 Gene3D Transferase(Phosphotransferase) domain 1 97 311 - -
Sed03g0133 667 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 6 657 IPR047173 GO:0043539(InterPro)
Sed03g0133 667 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Sed03g0133 667 MobiDBLite consensus disorder prediction 439 464 - -
Sed03g0133 667 CDD STKc_OSR1_SPAK 14 277 - -
Sed03g0133 667 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524(InterPro)
Sed03g0133 667 Coils Coil 627 661 - -
Sed03g0133 667 MobiDBLite consensus disorder prediction 448 464 - -
Sed03g0133 667 SMART serkin_6 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0133 667 FunFam Serine/threonine-protein kinase BLUS1 5 93 - -
Sed03g0133 667 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0133 Sed-Chr3:849643 Sed03g0135 Sed-Chr3:849643 1.30E-305 dispersed
Sed03g0133 Sed-Chr3:849643 Sed03g0134 Sed-Chr3:849643 0.00E+00 tandem
Sed03g0133 Sed-Chr3:849643 Sed06g0543 Sed-Chr6:4774716 8.90E-198 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78842 PF00069 Pkinase 4.50E-59 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0133 K08835 - csv:101205102 1241.48