Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0135 ATGGCTGGGAATATTTTGCTTGATTTTAATGGTACAGTCAAGTTAGCTGATTTTGGAGTCTCAGCTGGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACTTTTGTTGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAGCTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTGATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAAATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACGTGCCTGGTGAAAGATCCAAAGAAACGACCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAACATGTCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGAGGGCCTTGATCCATTAGGGGATCGTTTTAAGAAGCTAAAGGCGAAAGAGGCTGATCTTCTGGGGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCGAACATAGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAGGAATAATGAATTTAGCTTCCCAGTAGAGGGTTCACCCCTTGAAAGGCTGAATCACTCAACTGCTGCAGCTAATCAGGAGGATGGTTTCAATGATCTTCACGATTTGGAGAGTTCCCTTGCTTCATTTCCCATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATTAGCACGGACACTGTAAAGCCATTGGGAAGAGAAAATGGAAGAATTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTACAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCCAAAAGGATTACTGTAGATGGTGATAGGGATCATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATACCGTCAAAAAAGAGATACAATTAACGTTTCATCTGTTGAGGATACATCAGATGGAACCTTTGTTCAACGGAAGGGCCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCGAAGGGTCCAATGACAGGCTCATTTAGCCCCGTTTGTGGAGGGACGTTAAGTCCAACATCCCTGAACCTTACGCCTGCTCTACTCCTCCCATCAATGCAGTGCATTTTGCAGCAAAACATCCTGCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAATGCCTGGCAAGAATCTAGATGCATCAGAGACGGTCACCAGTGACCTTCTGCAGATACCACCAACATCCTTGAGGGAAAGAGAGCTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATAATCTTGTCGAGGAATTGGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAGGACACAATGACTTCCATGGCAAATAA 1584 42.11 MAGNILLDFNGTVKLADFGVSAGMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHVRSVDYLARTILEGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNRNNEFSFPVEGSPLERLNHSTAAANQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDTVKPLGRENGRIEGESSGQSGSLPRHYMSENKRSYSGSLISDNAVSPKRITVDGDRDHLQSKLPSERNYSGPLLYRQKRDTINVSSVEDTSDGTFVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTLSPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKYLEQMPGKNLDASETVTSDLLQIPPTSLRERELQSQVVHLQQRIDNLVEELEKQKLKNAEFEGHNDFHGK 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 849643 862514 - Sed0014717.3 Sed03g0135 705622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0135 527 Coils Coil 487 521 - -
Sed03g0135 527 ProSiteProfiles Protein kinase domain profile. 1 137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0135 527 MobiDBLite consensus disorder prediction 299 324 - -
Sed03g0135 527 Gene3D Transferase(Phosphotransferase) domain 1 2 171 - -
Sed03g0135 527 SMART serkin_6 1 137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0135 527 MobiDBLite consensus disorder prediction 308 324 - -
Sed03g0135 527 SUPERFAMILY Protein kinase-like (PK-like) 3 154 IPR011009 -
Sed03g0135 527 Pfam Protein kinase domain 4 137 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0135 527 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 2 517 IPR047173 GO:0043539(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0133 Sed-Chr3:849643 Sed03g0135 Sed-Chr3:849643 1.30E-305 dispersed
Sed03g0135 Sed-Chr3:849643 Sed06g0543 Sed-Chr6:4774716 1.40E-129 dispersed
Sed03g0134 Sed-Chr3:849643 Sed03g0135 Sed-Chr3:849643 1.30E-305 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78844 PF00069 Pkinase 1.10E-27 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0135 K08835 - csv:101205102 975.696