Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0135 | ATGGCTGGGAATATTTTGCTTGATTTTAATGGTACAGTCAAGTTAGCTGATTTTGGAGTCTCAGCTGGCATGTTTGATACTGGAGATAGGCAACGCTCAAGAAACACTTTTGTTGGAACTCCTTGCTGGATGGCACCTGAAGTTATGCAGCAGCTACATGGATATGACTTCAAGGCAGACATTTGGTCATTTGGAATAACAGCGCTTGAACTGGCTCATGGGCATGCTCCATTTTCTAAATACCCACCAATGAAAGTTTTGCTGATGACATTACAAAATGCTCCTCCTGGTCTTGACTATGAAAGAGATAAGAAATTTTCTAAGTCGTTCAAAGAAATGGTTGCTACGTGCCTGGTGAAAGATCCAAAGAAACGACCAAGTTCAGAGAAGCTCTTAAAGCACCCTTTTTTTAAACATGTCCGTTCAGTTGATTATCTTGCTCGAACAATCCTGGAGGGCCTTGATCCATTAGGGGATCGTTTTAAGAAGCTAAAGGCGAAAGAGGCTGATCTTCTGGGGCAGAACAAGGCTTTGTATGGAGACAAGGAGCATTTGTCACAGCAAGAGTATATTCGAGGAATTAGTGCCTGGAACTTCAACCTTGAGGATTTAAAGAATCAGGCTGCCCTTATTCAAGATGATGATATGTCGAACATAGAAGATCTAGATGTACATACAACAAAGCAAAGAAACAGGAATAATGAATTTAGCTTCCCAGTAGAGGGTTCACCCCTTGAAAGGCTGAATCACTCAACTGCTGCAGCTAATCAGGAGGATGGTTTCAATGATCTTCACGATTTGGAGAGTTCCCTTGCTTCATTTCCCATAAAACCTCTTGAAGCACTCAAAGATTGTTTTGACATCTATGAAGATATTAGCACGGACACTGTAAAGCCATTGGGAAGAGAAAATGGAAGAATTGAGGGTGAGAGTTCAGGGCAAAGTGGTTCCTTACCACGTCATTACATGTCAGAGAATAAGAGGTCTTACAGTGGTTCATTAATTTCTGACAATGCTGTTTCTCCCAAAAGGATTACTGTAGATGGTGATAGGGATCATTTGCAGTCAAAACTTCCATCTGAGCGTAATTACAGTGGTCCATTATTATACCGTCAAAAAAGAGATACAATTAACGTTTCATCTGTTGAGGATACATCAGATGGAACCTTTGTTCAACGGAAGGGCCGGTTTAAAGTTACTTCAGCAGAGCTTAGTCCGAAGGGTCCAATGACAGGCTCATTTAGCCCCGTTTGTGGAGGGACGTTAAGTCCAACATCCCTGAACCTTACGCCTGCTCTACTCCTCCCATCAATGCAGTGCATTTTGCAGCAAAACATCCTGCAACGGGAAGAAATTGTTAAATTGATCAAGTATTTGGAACAAATGCCTGGCAAGAATCTAGATGCATCAGAGACGGTCACCAGTGACCTTCTGCAGATACCACCAACATCCTTGAGGGAAAGAGAGCTACAATCTCAGGTCGTTCATCTGCAGCAGAGAATTGATAATCTTGTCGAGGAATTGGAGAAGCAGAAGTTGAAAAATGCCGAGTTTGAAGGACACAATGACTTCCATGGCAAATAA | 1584 | 42.11 | MAGNILLDFNGTVKLADFGVSAGMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKKFSKSFKEMVATCLVKDPKKRPSSEKLLKHPFFKHVRSVDYLARTILEGLDPLGDRFKKLKAKEADLLGQNKALYGDKEHLSQQEYIRGISAWNFNLEDLKNQAALIQDDDMSNIEDLDVHTTKQRNRNNEFSFPVEGSPLERLNHSTAAANQEDGFNDLHDLESSLASFPIKPLEALKDCFDIYEDISTDTVKPLGRENGRIEGESSGQSGSLPRHYMSENKRSYSGSLISDNAVSPKRITVDGDRDHLQSKLPSERNYSGPLLYRQKRDTINVSSVEDTSDGTFVQRKGRFKVTSAELSPKGPMTGSFSPVCGGTLSPTSLNLTPALLLPSMQCILQQNILQREEIVKLIKYLEQMPGKNLDASETVTSDLLQIPPTSLRERELQSQVVHLQQRIDNLVEELEKQKLKNAEFEGHNDFHGK | 527 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 849643 | 862514 | - | Sed0014717.3 | Sed03g0135 | 705622 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0135 | 527 | Coils | Coil | 487 | 521 | - | - | |
Sed03g0135 | 527 | ProSiteProfiles | Protein kinase domain profile. | 1 | 137 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0135 | 527 | MobiDBLite | consensus disorder prediction | 299 | 324 | - | - | |
Sed03g0135 | 527 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 171 | - | - | |
Sed03g0135 | 527 | SMART | serkin_6 | 1 | 137 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0135 | 527 | MobiDBLite | consensus disorder prediction | 308 | 324 | - | - | |
Sed03g0135 | 527 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 154 | IPR011009 | - | |
Sed03g0135 | 527 | Pfam | Protein kinase domain | 4 | 137 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0135 | 527 | PANTHER | SERINE/THREONINE-PROTEIN KINASE FRAY2 | 2 | 517 | IPR047173 | GO:0043539(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0133 | Sed-Chr3:849643 | Sed03g0135 | Sed-Chr3:849643 | 1.30E-305 | dispersed | |
Sed03g0135 | Sed-Chr3:849643 | Sed06g0543 | Sed-Chr6:4774716 | 1.40E-129 | dispersed | |
Sed03g0134 | Sed-Chr3:849643 | Sed03g0135 | Sed-Chr3:849643 | 1.30E-305 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78844 | PF00069 | Pkinase | 1.10E-27 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0135 | K08835 | - | csv:101205102 | 975.696 |