Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0140 ATGATGTCGGACGGTTTGGTCTTCAACCGGTCTCTAGGTCACGGTAACATGCTCTTCTTTGGGAGTGGCGATTCCATTCTTCGAGGGCCAAGGTTGACGATGGGGATGGAGGAAACTTCAAAGAAGCGACCCCTTTTCAGCTCTCTTGATGACTTGTTTGACGACGACTACTACGATGATCAGCTGCCTGAGAAGAAGCGCCGGCTAACTCAAGAACAGGTGCATCTGCTAGAGATTAGTTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTATCAAAGATGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTCGGTGGAAGACAAAGCAACTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCATTCAAGCTACGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGTAGAGGTAGCTTCTTTAATGGAGAAACTTCAATCGAAAGAAGTGGTCGAATCCTCGTTTCAAGCTAAGAACTCCGAGCCAATTTTGGAAGATCAAATTCTTGTTCCTGTTGTGCGACATAACATGAATATTGAGGAACACCATAGTTGCAGGAGCAATGGAAGTGCTGTGTTGGATGAGGATGGTCCTCAACTCTTAGACAGTGGGGATTCATACCTCTTGAGCAATGACTATGATAGCTGTATTTTGCCAGTTTTCGGAGTGAACTCGGAGGAGGAGGACGGGAGTGACGATGGTCCTGGGTACTTCTCAGGTGTTTATACAACATCCGATCAGCAAACTCACAAGGGAGACCCTCTGACCTGGTGGGACTGGACGTCATAA 837 46.95 MMSDGLVFNRSLGHGNMLFFGSGDSILRGPRLTMGMEETSKKRPLFSSLDDLFDDDYYDDQLPEKKRRLTQEQVHLLEISFEAENKLEPERKTELSKMLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFHSSYDFVVKENERLKVEVASLMEKLQSKEVVESSFQAKNSEPILEDQILVPVVRHNMNIEEHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDSCILPVFGVNSEEEDGSDDGPGYFSGVYTTSDQQTHKGDPLTWWDWTS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 895749 899349 + Sed0015149.2 Sed03g0140 705627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0140 278 MobiDBLite consensus disorder prediction 254 269 - -
Sed03g0140 278 CDD homeodomain 65 121 IPR001356 GO:0003677(InterPro)
Sed03g0140 278 Coils Coil 140 167 - -
Sed03g0140 278 FunFam homeobox-leucine zipper protein ATHB-6-like 68 114 - -
Sed03g0140 278 ProSitePatterns 'Homeobox' domain signature. 95 118 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed03g0140 278 SMART HOX_1 63 124 IPR001356 GO:0003677(InterPro)
Sed03g0140 278 ProSiteProfiles 'Homeobox' domain profile. 60 120 IPR001356 GO:0003677(InterPro)
Sed03g0140 278 MobiDBLite consensus disorder prediction 240 269 - -
Sed03g0140 278 Pfam Homeodomain 65 118 IPR001356 GO:0003677(InterPro)
Sed03g0140 278 Gene3D - 59 126 - -
Sed03g0140 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 39 199 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed03g0140 278 Pfam Homeobox associated leucine zipper 120 162 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0140 278 SUPERFAMILY Homeodomain-like 55 122 IPR009057 -
Sed03g0140 278 PRINTS Lambda-repressor HTH signature 91 100 IPR000047 GO:0003677(InterPro)
Sed03g0140 278 PRINTS Lambda-repressor HTH signature 100 116 IPR000047 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0140 Sed-Chr3:895749 Sed11g1931 Sed-Chr11:33725685 1.80E-112 dispersed
Sed03g0139 Sed-Chr3:895749 Sed03g0140 Sed-Chr3:895749 8.30E-158 tandem
Sed03g0140 Sed-Chr3:895749 Sed03g0141 Sed-Chr3:895749 8.30E-158 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37709 PF00046 Homeodomain 1.80E-16 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0140 K09338 - csv:101210106 456.447