Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0140 | ATGATGTCGGACGGTTTGGTCTTCAACCGGTCTCTAGGTCACGGTAACATGCTCTTCTTTGGGAGTGGCGATTCCATTCTTCGAGGGCCAAGGTTGACGATGGGGATGGAGGAAACTTCAAAGAAGCGACCCCTTTTCAGCTCTCTTGATGACTTGTTTGACGACGACTACTACGATGATCAGCTGCCTGAGAAGAAGCGCCGGCTAACTCAAGAACAGGTGCATCTGCTAGAGATTAGTTTTGAGGCAGAAAACAAACTGGAGCCAGAGCGCAAGACTGAGCTATCAAAGATGCTGGGTCTGCAGCCAAGGCAAGTGGCTGTGTGGTTTCAAAACCGCCGAGCTCGGTGGAAGACAAAGCAACTTGAAAGGGACTATGATCTTCTCAAATCTTCATATGATTCCTTTCATTCAAGCTACGACTTTGTTGTCAAGGAGAATGAAAGGCTCAAAGTAGAGGTAGCTTCTTTAATGGAGAAACTTCAATCGAAAGAAGTGGTCGAATCCTCGTTTCAAGCTAAGAACTCCGAGCCAATTTTGGAAGATCAAATTCTTGTTCCTGTTGTGCGACATAACATGAATATTGAGGAACACCATAGTTGCAGGAGCAATGGAAGTGCTGTGTTGGATGAGGATGGTCCTCAACTCTTAGACAGTGGGGATTCATACCTCTTGAGCAATGACTATGATAGCTGTATTTTGCCAGTTTTCGGAGTGAACTCGGAGGAGGAGGACGGGAGTGACGATGGTCCTGGGTACTTCTCAGGTGTTTATACAACATCCGATCAGCAAACTCACAAGGGAGACCCTCTGACCTGGTGGGACTGGACGTCATAA | 837 | 46.95 | MMSDGLVFNRSLGHGNMLFFGSGDSILRGPRLTMGMEETSKKRPLFSSLDDLFDDDYYDDQLPEKKRRLTQEQVHLLEISFEAENKLEPERKTELSKMLGLQPRQVAVWFQNRRARWKTKQLERDYDLLKSSYDSFHSSYDFVVKENERLKVEVASLMEKLQSKEVVESSFQAKNSEPILEDQILVPVVRHNMNIEEHHSCRSNGSAVLDEDGPQLLDSGDSYLLSNDYDSCILPVFGVNSEEEDGSDDGPGYFSGVYTTSDQQTHKGDPLTWWDWTS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 895749 | 899349 | + | Sed0015149.2 | Sed03g0140 | 705627 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0140 | 278 | MobiDBLite | consensus disorder prediction | 254 | 269 | - | - | |
Sed03g0140 | 278 | CDD | homeodomain | 65 | 121 | IPR001356 | GO:0003677(InterPro) | |
Sed03g0140 | 278 | Coils | Coil | 140 | 167 | - | - | |
Sed03g0140 | 278 | FunFam | homeobox-leucine zipper protein ATHB-6-like | 68 | 114 | - | - | |
Sed03g0140 | 278 | ProSitePatterns | 'Homeobox' domain signature. | 95 | 118 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Sed03g0140 | 278 | SMART | HOX_1 | 63 | 124 | IPR001356 | GO:0003677(InterPro) | |
Sed03g0140 | 278 | ProSiteProfiles | 'Homeobox' domain profile. | 60 | 120 | IPR001356 | GO:0003677(InterPro) | |
Sed03g0140 | 278 | MobiDBLite | consensus disorder prediction | 240 | 269 | - | - | |
Sed03g0140 | 278 | Pfam | Homeodomain | 65 | 118 | IPR001356 | GO:0003677(InterPro) | |
Sed03g0140 | 278 | Gene3D | - | 59 | 126 | - | - | |
Sed03g0140 | 278 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 39 | 199 | IPR045224 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER) | |
Sed03g0140 | 278 | Pfam | Homeobox associated leucine zipper | 120 | 162 | IPR003106 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0140 | 278 | SUPERFAMILY | Homeodomain-like | 55 | 122 | IPR009057 | - | |
Sed03g0140 | 278 | PRINTS | Lambda-repressor HTH signature | 91 | 100 | IPR000047 | GO:0003677(InterPro) | |
Sed03g0140 | 278 | PRINTS | Lambda-repressor HTH signature | 100 | 116 | IPR000047 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0140 | Sed-Chr3:895749 | Sed11g1931 | Sed-Chr11:33725685 | 1.80E-112 | dispersed | |
Sed03g0139 | Sed-Chr3:895749 | Sed03g0140 | Sed-Chr3:895749 | 8.30E-158 | tandem | |
Sed03g0140 | Sed-Chr3:895749 | Sed03g0141 | Sed-Chr3:895749 | 8.30E-158 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37709 | PF00046 | Homeodomain | 1.80E-16 | CL0123 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0140 | K09338 | - | csv:101210106 | 456.447 |