Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0153 ATGGCTCCAAGCTCTGTTGTGATCACAATCGAGAAACATAACAACTTACCTTTACTGGAAATCAATGGCTCTGATTCTTTGTTGCTTCCAGAGAAGCACAAAGCCGCCAGTCCCAAGCAACTCACTTGGGTTCTTCTTCTCAAAGCTCACAAAGCTCTGTTTTTCTTCTCGTGGTTGGCTATGGCTGTAAAGACTCTGTTTGCTTCTGTTAAGAAACGCATTGCTAATGCGGATATCAACAAAGAGGATTCGAAAAGCCGAGGGAAGTTGTATGGGTTCATTAAGGCTTTTCTTGCGATTTCGATTGCGGGTTTGATTGTTGAAATTGTTGCCCATTTCAAGAACTGGAATCTGGGAATGATTCAGGTTCATGGGGTTGTTCAATGGCTTTTTGTCTCGTGGCTTTCGTTTCGAGTTGATTACATTGCTCCACTTGTGTTGATGCTTTCTAAATTCTGCATTGTTCTGTTCTTGATCCAATCTCTTGATCGTTTTGTTCTCTGTGTCGGCTGCTTTTGGATCAAGTTTAAGAAAATCAAACCCATGATTCGTGATGATGTTTATGATTTGGATGATGCTTCTACTTTTCCTATGGTTCTTGTTCAAATCCCAATGTGTAATGAAAGAGAGGTTTATGCGCAATCGATTGCTGCGGCGTGTGAGCTCGATTGGCCGAGGAATCGGATTTTGATTCAAGTTCTTGATGATTCTGATGATGGAAATCTTCAGGGTTTGATCAAGGAAGAAGTTCTATCATGGAATGAAAAGGGTGTTAATATTGTTTATAGACATAGATTGATCCGAACTGGATATAAAGCTGGGAATCTGAAGTCTGCTATGGCTTGTGATTATGTTAAAGATTATGAGTTTGTAGCTATTTTAGATGCAGATTTCCAGCCCAATCCTGATTTTCTTAAACTTACTGTTCCCCACTTTAAGGGAAATCCGCAACTTGGTCTCGTTCAAGCTCGATGGGCGTTCGTTAATAAGGAGGAAAACTTACTCACAAGACTCCAAAACATCAACTTGTGCTTCCATTTTGAAGTGGAGCAGCAAGTGAATGGGCTTTTCCTGAACTTCTTTGGATTCAATGGAACGGCAGGCGTTTGGAGAGCAGAAGCACTTGAGGAATCCGGTGGCTGGCTCGAGCGAACGACTGTGGAAGATATGGATATCGCAGTTCGAGCACACTTGAAGGGATGGAAATTCATCTTCCTCAATGATGTCAAGGTGCTTTGTGAATTGCCTGAATCATATGAAGCTTACAAGAAACAGCAACACCGTTGGCATTCTGGTCCAATGCAGCTCTTCAGATTATGCCTTCCTTCTATCATTACTTCAAAGATATCGATATGGAAGAAGACCAACTTGATATTCCTGTTCTTTCTCTTGAGAAAACTTATCCTTCCATTTTACTCATTCACTTTGTTTTGCATCATACTTCCATTGACAATGTTTATTCCAGAAGCAGAATTGCCTCTTTGGGTAATCTGCTACATCCCAGTCTTCATGTCCTTGCTAAACATTCTTCCATCCCCCAAATCCTTCCCATTCTTGATCCCATACCTCTTGTTCGAGAACACCATGTCTGTCACGAAGTTCAACGCCATGGTTTCCGGGCTATTCCAGCTCGGAAGTTCGTACGAATGGATCGTGACAAAGAAGACGGGGCGATCATCCGAATCCGACTTCTTAGCATTAGCCGAGCGAGAATCGAAAACTACGAATGAGGAGAAGATTCTGAGGAGACATTCGGAGTCGGGGTTGGAGTTGTTGAGTAAATTGAACCAACAAGAGAAGCAAATGGCTTCAAAGAAGAAGAGAAACAAGGTGTATAGAAAAGAACTTGCTCTTGCTTTTCTGCTGCTAACTGCATCAGCTAGAAGCTTCTTATCAGCACATGGAATTCACTTCTATTTCTTGCTTTTTCAAGGTTTGTCATTCCTGGTAGTGGGTTTGGACTTGATTGGGGAGCAAATGAACTGA 1986 41.89 MAPSSVVITIEKHNNLPLLEINGSDSLLLPEKHKAASPKQLTWVLLLKAHKALFFFSWLAMAVKTLFASVKKRIANADINKEDSKSRGKLYGFIKAFLAISIAGLIVEIVAHFKNWNLGMIQVHGVVQWLFVSWLSFRVDYIAPLVLMLSKFCIVLFLIQSLDRFVLCVGCFWIKFKKIKPMIRDDVYDLDDASTFPMVLVQIPMCNEREVYAQSIAAACELDWPRNRILIQVLDDSDDGNLQGLIKEEVLSWNEKGVNIVYRHRLIRTGYKAGNLKSAMACDYVKDYEFVAILDADFQPNPDFLKLTVPHFKGNPQLGLVQARWAFVNKEENLLTRLQNINLCFHFEVEQQVNGLFLNFFGFNGTAGVWRAEALEESGGWLERTTVEDMDIAVRAHLKGWKFIFLNDVKVLCELPESYEAYKKQQHRWHSGPMQLFRLCLPSIITSKISIWKKTNLIFLFFLLRKLILPFYSFTLFCIILPLTMFIPEAELPLWVICYIPVFMSLLNILPSPKSFPFLIPYLLFENTMSVTKFNAMVSGLFQLGSSYEWIVTKKTGRSSESDFLALAERESKTTNEEKILRRHSESGLELLSKLNQQEKQMASKKKRNKVYRKELALAFLLLTASARSFLSAHGIHFYFLLFQGLSFLVVGLDLIGEQMN 661
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 945109 947968 - Sed0019649.1 Sed03g0153 705640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0153 661 SUPERFAMILY Nucleotide-diphospho-sugar transferases 199 499 IPR029044 -
Sed03g0153 661 Coils Coil 595 615 - -
Sed03g0153 661 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 190 416 IPR029044 -
Sed03g0153 661 FunFam probable xyloglucan glycosyltransferase 5 191 415 - -
Sed03g0153 661 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 120 660 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Sed03g0153 661 Pfam Glycosyl transferase family group 2 291 497 IPR001173 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0153 K20887 - - csv:101208151 1190.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0153 Sed-Chr3:945109 Sed11g1870 Sed-Chr11:33295111 1.90E-245 dispersed
Sed13g2106 Sed-Chr13:25730419 Sed03g0153 Sed-Chr3:945109 1.30E-271 transposed
Sed11g1949 Sed-Chr11:33794837 Sed03g0153 Sed-Chr3:945109 0.00E+00 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed13g2106 . 1 695 REM Transcription Factor Family AT2G24630 78.7 0.0e+00 1103.6
Sed03g0153 . 6 661 REM Transcription Factor Family AT2G24630 68.3 1.9e-264 909.4
Sed13g1835 . 1 702 REM Transcription Factor Family AT2G24630 65.0 3.3e-264 908.7
Sed11g1949 . 6 660 REM Transcription Factor Family AT2G24630 68.5 1.4e-262 903.3
Sed11g1870 . 8 704 REM Transcription Factor Family AT2G24630 63.8 3.8e-260 895.2
Sed10g1150 . 5 692 REM Transcription Factor Family AT2G24630 65.0 5.3e-254 874.8
Sed09g0998 . 4 689 REM Transcription Factor Family AT2G24630 61.4 2.7e-242 835.9
Sed07g0261 . 5 690 REM Transcription Factor Family AT2G24630 61.7 2.8e-239 825.9
Sed05g3646 . 205 365 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3647 . 220 380 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed05g3648 . 177 337 REM Transcription Factor Family AT1G49480 73.3 1.9e-59 226.9
Sed01g0326 . 130 369 REM Transcription Factor Family AT1G49480 55.0 1.0e-57 221.1
Sed01g0325 . 263 395 REM Transcription Factor Family AT1G49480 80.5 7.5e-56 214.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010069 0 1 0 0 0 1 2 1 1 1 2 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33