Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0156 ATGGAGTTTCAAGAGGGTTTGATGAAGTTTTTGGTCCATAGACAGGTTAAAGACAACTGGGTTTTCGATAAAAATTCTCAATCGGTTTCTGTTTCTGAGTTAACCGGTGGTACTCCTCGTCGGAAATGGCGGATCTTCAATCGCTCGTCTTCTTCCCCATTTCCCTCGAAACCCCAATTGAAGGAAATTCCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCTGTCATTGTCTCCTCTGGTCACACTTTCGAAGCTGCTTGTGTTTACGTTTGTAAAGAATTAGGGTTTTGCCCGATTTTGTCAGATGGGTTGAAGCCGGATTTCTCGTCCGTTATACCGAATCTTGCTTTGAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTGAAGAACCCCCAAAACCCCTCGATTTCTCTTCCGCTGAAAAGCTTGTTCGTGAATTCATGGCCGCTAATGGCAAATCCGATGAGGAATTGATTCAAGGGGTTGCGGAAAATCCTGGGGTTCCTCGATTCAACCACGCCGCCACGGAAATTGGTCGTCGGAAATCGCATTTCTACTCCGATGAATCTGTCGCCGGCGTTCCGACTCTGCCTCTGCCACTCGCCACTCGTCCGAGTTGCTGTTCTTCGTCTTCTTCATCTGAAATCGAGATTGAAGAAGAAGAAGAAGAGATTCTCGTTAAGCTTAAAAGCTCTCAGGTTATTGAAGTTGAAGAAGCTGTGATTACGCTGAGAAAGATCACTAGAACTCGAGAAGATTCTAGGGTTCATCTCTGTTCTCCTCTTCTTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGATACAGTGGTATTCAGGTGAATTCAGTTGCAGCCCTTGTAAATCTATCTTTAGAGAATTTGAACAAAGTTAAGATTGTACGATCTGGGATTCTCCCCAATTTGATCGATGTTTTGAAAGGTGGTTCGCCGGAGGTTCAAGAACACGCCGCCGGAGCTATTTTCAGCTTAGCTCTCGACGATGATAATAAAACTGCAATCGGCGTATTGGGTGCTTTGTCGCCATTGATACGGTTGCTTGTATCCGACTCGGAGCGGACTCGGGCCGACTCGGCTCTTGCTCTGTACCACTTATCGCACGTACAGAGCAACCGATCCAAGCTTGTGAAGCTTGGGTCGGTGCCAGTTTTTCTCGGGATGGTGAAATCCGGTCATATGAGTGGCCGGATTTTGTTGATACTGTGTAATTTAGCAGCCTGTTTCGAGGGTCGGGCGGCGCTGTTGGATTCCGGTGCGGTGGAGTGTTTGGTGGGAATGTTGAGAGAGAACGAGTTGGACTCTGAGTCAAGTCAGGAGAGTTGTGTGGCGGTTTTGTTTGGGTTGAGTTACGGCGGTTTGCGGTTCAAGGGCCTGGCGAAAACCGCCGGAGCAATGGAGGTTTTCATGGCGGTTGAGAAAAATGGGAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTTCATGAAAGTCAGAGATGAGGAAGCAGAGGATGTGAATTGGGAGGAGTTGCTTGACTCGGGCAGCTTCGGCAGCCGAACTCGGTGTCGACTCGGTCCCAGTATGGACAGGTCCACTGCGAACTCGTCTGAGTTCTGA 1638 47.92 MEFQEGLMKFLVHRQVKDNWVFDKNSQSVSVSELTGGTPRRKWRIFNRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVYVCKELGFCPILSDGLKPDFSSVIPNLALKSTIFNWCKNSSEEPPKPLDFSSAEKLVREFMAANGKSDEELIQGVAENPGVPRFNHAATEIGRRKSHFYSDESVAGVPTLPLPLATRPSCCSSSSSSEIEIEEEEEEILVKLKSSQVIEVEEAVITLRKITRTREDSRVHLCSPLLLSALRSLIVSRYSGIQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALSPLIRLLVSDSERTRADSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSGHMSGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESSQESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMEFMKVRDEEAEDVNWEELLDSGSFGSRTRCRLGPSMDRSTANSSEF 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 967307 969627 - Sed0008563.1 Sed03g0156 705643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0156 545 SMART arm_5 298 338 IPR000225 GO:0005515(InterPro)
Sed03g0156 545 SMART arm_5 419 462 IPR000225 GO:0005515(InterPro)
Sed03g0156 545 SMART arm_5 339 379 IPR000225 GO:0005515(InterPro)
Sed03g0156 545 PANTHER U BOX DOMAIN-CONTAINING 47 502 - -
Sed03g0156 545 FunFam RING-type E3 ubiquitin transferase 226 502 - -
Sed03g0156 545 Gene3D - 221 500 IPR011989 -
Sed03g0156 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 309 346 IPR000225 GO:0005515(InterPro)
Sed03g0156 545 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 350 392 IPR000225 GO:0005515(InterPro)
Sed03g0156 545 SUPERFAMILY ARM repeat 234 484 IPR016024 -
Sed03g0156 545 SMART Ubox_2 66 129 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g0156 545 Pfam U-box domain 63 133 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g0156 545 SUPERFAMILY RING/U-box 58 136 - -
Sed03g0156 545 ProSiteProfiles U-box domain profile. 62 136 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Sed03g0156 545 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 135 IPR013083 -
Sed03g0156 545 Pfam Armadillo/beta-catenin-like repeat 301 337 IPR000225 GO:0005515(InterPro)
Sed03g0156 545 Pfam Armadillo/beta-catenin-like repeat 339 378 IPR000225 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0156 Sed-Chr3:967307 Sed12g1903 Sed-Chr12:30199477 5.70E-94 dispersed
Sed03g0156 Sed-Chr3:967307 Sed13g1382 Sed-Chr13:19282203 1.00E-10 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0156 - - - 0.0