Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0156 | ATGGAGTTTCAAGAGGGTTTGATGAAGTTTTTGGTCCATAGACAGGTTAAAGACAACTGGGTTTTCGATAAAAATTCTCAATCGGTTTCTGTTTCTGAGTTAACCGGTGGTACTCCTCGTCGGAAATGGCGGATCTTCAATCGCTCGTCTTCTTCCCCATTTCCCTCGAAACCCCAATTGAAGGAAATTCCCAAAGAATTGCTCTGTCCCATTTCTGGGTCTTTAATGGCGGACCCTGTCATTGTCTCCTCTGGTCACACTTTCGAAGCTGCTTGTGTTTACGTTTGTAAAGAATTAGGGTTTTGCCCGATTTTGTCAGATGGGTTGAAGCCGGATTTCTCGTCCGTTATACCGAATCTTGCTTTGAAATCCACCATTTTCAATTGGTGTAAAAACTCCTCTGAAGAACCCCCAAAACCCCTCGATTTCTCTTCCGCTGAAAAGCTTGTTCGTGAATTCATGGCCGCTAATGGCAAATCCGATGAGGAATTGATTCAAGGGGTTGCGGAAAATCCTGGGGTTCCTCGATTCAACCACGCCGCCACGGAAATTGGTCGTCGGAAATCGCATTTCTACTCCGATGAATCTGTCGCCGGCGTTCCGACTCTGCCTCTGCCACTCGCCACTCGTCCGAGTTGCTGTTCTTCGTCTTCTTCATCTGAAATCGAGATTGAAGAAGAAGAAGAAGAGATTCTCGTTAAGCTTAAAAGCTCTCAGGTTATTGAAGTTGAAGAAGCTGTGATTACGCTGAGAAAGATCACTAGAACTCGAGAAGATTCTAGGGTTCATCTCTGTTCTCCTCTTCTTCTCTCTGCTCTTCGATCTCTCATCGTCTCAAGATACAGTGGTATTCAGGTGAATTCAGTTGCAGCCCTTGTAAATCTATCTTTAGAGAATTTGAACAAAGTTAAGATTGTACGATCTGGGATTCTCCCCAATTTGATCGATGTTTTGAAAGGTGGTTCGCCGGAGGTTCAAGAACACGCCGCCGGAGCTATTTTCAGCTTAGCTCTCGACGATGATAATAAAACTGCAATCGGCGTATTGGGTGCTTTGTCGCCATTGATACGGTTGCTTGTATCCGACTCGGAGCGGACTCGGGCCGACTCGGCTCTTGCTCTGTACCACTTATCGCACGTACAGAGCAACCGATCCAAGCTTGTGAAGCTTGGGTCGGTGCCAGTTTTTCTCGGGATGGTGAAATCCGGTCATATGAGTGGCCGGATTTTGTTGATACTGTGTAATTTAGCAGCCTGTTTCGAGGGTCGGGCGGCGCTGTTGGATTCCGGTGCGGTGGAGTGTTTGGTGGGAATGTTGAGAGAGAACGAGTTGGACTCTGAGTCAAGTCAGGAGAGTTGTGTGGCGGTTTTGTTTGGGTTGAGTTACGGCGGTTTGCGGTTCAAGGGCCTGGCGAAAACCGCCGGAGCAATGGAGGTTTTCATGGCGGTTGAGAAAAATGGGAGTGAGAGATCAAAAGAGAAGGTGAAGAGGATCATGGAGTTCATGAAAGTCAGAGATGAGGAAGCAGAGGATGTGAATTGGGAGGAGTTGCTTGACTCGGGCAGCTTCGGCAGCCGAACTCGGTGTCGACTCGGTCCCAGTATGGACAGGTCCACTGCGAACTCGTCTGAGTTCTGA | 1638 | 47.92 | MEFQEGLMKFLVHRQVKDNWVFDKNSQSVSVSELTGGTPRRKWRIFNRSSSSPFPSKPQLKEIPKELLCPISGSLMADPVIVSSGHTFEAACVYVCKELGFCPILSDGLKPDFSSVIPNLALKSTIFNWCKNSSEEPPKPLDFSSAEKLVREFMAANGKSDEELIQGVAENPGVPRFNHAATEIGRRKSHFYSDESVAGVPTLPLPLATRPSCCSSSSSSEIEIEEEEEEILVKLKSSQVIEVEEAVITLRKITRTREDSRVHLCSPLLLSALRSLIVSRYSGIQVNSVAALVNLSLENLNKVKIVRSGILPNLIDVLKGGSPEVQEHAAGAIFSLALDDDNKTAIGVLGALSPLIRLLVSDSERTRADSALALYHLSHVQSNRSKLVKLGSVPVFLGMVKSGHMSGRILLILCNLAACFEGRAALLDSGAVECLVGMLRENELDSESSQESCVAVLFGLSYGGLRFKGLAKTAGAMEVFMAVEKNGSERSKEKVKRIMEFMKVRDEEAEDVNWEELLDSGSFGSRTRCRLGPSMDRSTANSSEF | 545 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 967307 | 969627 | - | Sed0008563.1 | Sed03g0156 | 705643 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0156 | 545 | SMART | arm_5 | 298 | 338 | IPR000225 | GO:0005515(InterPro) | |
Sed03g0156 | 545 | SMART | arm_5 | 419 | 462 | IPR000225 | GO:0005515(InterPro) | |
Sed03g0156 | 545 | SMART | arm_5 | 339 | 379 | IPR000225 | GO:0005515(InterPro) | |
Sed03g0156 | 545 | PANTHER | U BOX DOMAIN-CONTAINING | 47 | 502 | - | - | |
Sed03g0156 | 545 | FunFam | RING-type E3 ubiquitin transferase | 226 | 502 | - | - | |
Sed03g0156 | 545 | Gene3D | - | 221 | 500 | IPR011989 | - | |
Sed03g0156 | 545 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 309 | 346 | IPR000225 | GO:0005515(InterPro) | |
Sed03g0156 | 545 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 350 | 392 | IPR000225 | GO:0005515(InterPro) | |
Sed03g0156 | 545 | SUPERFAMILY | ARM repeat | 234 | 484 | IPR016024 | - | |
Sed03g0156 | 545 | SMART | Ubox_2 | 66 | 129 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g0156 | 545 | Pfam | U-box domain | 63 | 133 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g0156 | 545 | SUPERFAMILY | RING/U-box | 58 | 136 | - | - | |
Sed03g0156 | 545 | ProSiteProfiles | U-box domain profile. | 62 | 136 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Sed03g0156 | 545 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 135 | IPR013083 | - | |
Sed03g0156 | 545 | Pfam | Armadillo/beta-catenin-like repeat | 301 | 337 | IPR000225 | GO:0005515(InterPro) | |
Sed03g0156 | 545 | Pfam | Armadillo/beta-catenin-like repeat | 339 | 378 | IPR000225 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0156 | Sed-Chr3:967307 | Sed12g1903 | Sed-Chr12:30199477 | 5.70E-94 | dispersed | |
Sed03g0156 | Sed-Chr3:967307 | Sed13g1382 | Sed-Chr13:19282203 | 1.00E-10 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0156 | - | - | - | 0.0 |