Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0171 ATGGAAATCTCCTCCAAGTTCTTCCTCACATGGGTTTCTCTTCATCTTCTTCTTCTGCTTTGTGTTTCCGCAGTTGTTGAAGACGACATTAGGTGTCTTCGAGGGGTTAAGAATTCGCTCGTTGATCCCAACGGAAAGCTCAGTTCCTGGGATTTCAAGAACACGTCCGTCGGAAATCTCTGCAGCAAATTCGTCGGACTTTCGTGCTGGAACGACCGGGAGAATCGGATTCTGAGCCTTGAGCTCAGAGATATGAAGCTCTCCGGTTCGATTTCTGAGGATTTGCAGTACTGTGTGAGCTTGCAGAGAATGGATCTGTCCGGAAACGAGTTCTCCGGCGAGATCCCGCCGCGTATTTGTAAGTGGCTTCCTTATTTGGTTAATCTTGATTTGTCGAACAATAGATTCTCGGGCCCTATTCCGGCTGATCTCGCCGGATGTTCTTATTTGAATTCGTTGATTTTGTCTGATAATGGCCTTTCGGGTACGATTCCAGTTGAGCTTACGAGTTTGGGTAGGCTTAGTAAATTTTCTGTTGCGAATAATGATCTTACTGGTTCTGTTCCTCCGTTTTTTGATAAATTTGGGAAGGAGGATTTTGATGGGAATGGTGATTTATGTGGAGGGCCTGTTGGATCAAACTGTGGTGGTTTGAGCAAGAAGAATTTGGCCATTATTATAGCTGCTGGTGTGTTTGGTGCTGCAGCTTCTTTGTTGTTAGGGTTTGGGTTGTGGTGGTGGTATCATTCTAGAATGAACATGAAGAAAAGGGGATTTGGGAATGAGATTAGTGGGGATTGGGCTGATAGATTGAGAGCTTATAAGCTAGTTCAAGTTTCATTGTTTCAAAAGCCTCTTGTGAAAGTTAAGTTGGCTGATTTGATGTCTGCTACTAACAATTTCAATTCTGCAAATATAATAGTTTCTTCTAGAACTGGAACTACTTACAGAGCTGTTCTACCTGATGGCTCTGTGCTTGCTATTAAGCGGCTCAATACCTGCAAGCTTGGCGAGAAGCTGTTTCGGATGGAGATGAACCGGTTAGGATTGATAAGGCACCCGAATTTGACACCCCTTTTGGGATTTTGTGTTGTGGAAGAGGAAAAGCTTTTGGTTTATAAGTATATGTCGAATGGGACTTTGTCTTCTTTGTTACATGGAAATGTTGAGATATTGGATTGGGCAACTAGGTTTAGGATTGGTCTCGGTGCGGCTAGGGGTCTTGCTTGGCTTCACCATGGATGCCAACCACCATTCATGCATCAAAACATATGTTCTAGTGTAATTCTTGTGGATGACGACTATGATGCTAGGATCATGGATTTTGGATTGGCAAGGTTGATGGCTTCGGATTCTCACGACAGTAGTTTTGTTAATGGAGATCTTGGGGAGCTTGGCTACGTCGCTCCTGAATATCCGAGCACTATGGTTGCTTCTTTGAAGGGGGATGTTTATGGATTTGGTGTCGTGCTTTTGGAGTTGGTCACTGGGCAAAAACCTCTAGAAGTCACCAAAGCAGAGGAAGGCTATAAGGGTAACTTGGTGGATTGGGTTAATCAGATAAGTATTTCGGGTCAAATTAAGGACGTTATAGATAAAAATCTTTGTGGAAAAGGGAATGATGAGGAAATCTTACAGTTCCTGAAAATTACAATGAACTGCATTGTTTCTCGGCCCAAGGATAGATGGTCTATGTATCAGGTTTATCAATCAATGAAAGCAATGGCTAAAGACTACAGTTTTTCTGAACAAGATGATGAGTTCCCACTTTTACTCGGCAAGGGCGATAACGAGCCAGTGTAG 1803 43.21 MEISSKFFLTWVSLHLLLLLCVSAVVEDDIRCLRGVKNSLVDPNGKLSSWDFKNTSVGNLCSKFVGLSCWNDRENRILSLELRDMKLSGSISEDLQYCVSLQRMDLSGNEFSGEIPPRICKWLPYLVNLDLSNNRFSGPIPADLAGCSYLNSLILSDNGLSGTIPVELTSLGRLSKFSVANNDLTGSVPPFFDKFGKEDFDGNGDLCGGPVGSNCGGLSKKNLAIIIAAGVFGAAASLLLGFGLWWWYHSRMNMKKRGFGNEISGDWADRLRAYKLVQVSLFQKPLVKVKLADLMSATNNFNSANIIVSSRTGTTYRAVLPDGSVLAIKRLNTCKLGEKLFRMEMNRLGLIRHPNLTPLLGFCVVEEEKLLVYKYMSNGTLSSLLHGNVEILDWATRFRIGLGAARGLAWLHHGCQPPFMHQNICSSVILVDDDYDARIMDFGLARLMASDSHDSSFVNGDLGELGYVAPEYPSTMVASLKGDVYGFGVVLLELVTGQKPLEVTKAEEGYKGNLVDWVNQISISGQIKDVIDKNLCGKGNDEEILQFLKITMNCIVSRPKDRWSMYQVYQSMKAMAKDYSFSEQDDEFPLLLGKGDNEPV 600
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1081496 1084324 + Sed0004182.1 Sed03g0171 705658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0171 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 262 375 - -
Sed03g0171 600 Gene3D Ribonuclease Inhibitor 26 216 IPR032675 -
Sed03g0171 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 376 594 - -
Sed03g0171 600 Gene3D Phosphorylase Kinase; domain 1 261 375 - -
Sed03g0171 600 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 26 216 - -
Sed03g0171 600 Pfam Leucine Rich Repeat 100 121 IPR001611 GO:0005515(InterPro)
Sed03g0171 600 Pfam Leucine Rich Repeat 126 147 IPR001611 GO:0005515(InterPro)
Sed03g0171 600 Pfam Leucine Rich Repeat 150 171 IPR001611 GO:0005515(InterPro)
Sed03g0171 600 Gene3D Transferase(Phosphotransferase) domain 1 376 594 - -
Sed03g0171 600 PANTHER RECEPTOR-LIKE PROTEIN 55 74 571 - -
Sed03g0171 600 ProSiteProfiles Protein kinase domain profile. 301 575 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0171 600 SUPERFAMILY Protein kinase-like (PK-like) 278 571 IPR011009 -
Sed03g0171 600 SUPERFAMILY L domain-like 26 198 - -
Sed03g0171 600 Pfam Leucine rich repeat N-terminal domain 27 70 IPR013210 -
Sed03g0171 600 Pfam Protein tyrosine and serine/threonine kinase 325 518 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0171 Sed-Chr3:1081496 Sed07g0515 Sed-Chr7:3906704 9.90E-124 dispersed
Sed11g1975 Sed-Chr11:33994818 Sed03g0171 Sed-Chr3:1081496 1.20E-286 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78846 PF07714 PK_Tyr_Ser-Thr 2.10E-28 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0171 - - - 0.0