Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0193 ATGGCTTCTCCTCATCATCCCCATAGCTTCATGTTCCAATCTCGACCGCCCGACCGCCATGAATACGCCTCCTCGACCTCCTTCAACAACATCCCCTCCTGCCCTCCCCATCTCTACTTTCACGATGGGGTGGTCCCGCTGATGATGAAGAGATCGATGTCATTTTCGGGAGTGGAAAACAACGGGTGCGAGGAAGGGAACGGAGACGAGGGATTGTCGGACGACGGATCGGCATTGGGAGAGAAGAAGAAGCGCCTAAACTTAGAGCAAGTGAAGGCATTGGAGAAGAGCTTCGAGCTCGGAAACAAGCTCGAGCCGGAGAGGAAGATGCAGCTAGCCAAGGCTCTGGGGTTGCAGCCAAGACAAATTGCTATTTGGTTTCAGAACAGAAGGGCCAGGTGGAAGACCAAGCAGTTGGAGAGAGACTACGAGGTGCTCAAGAAACAGTTTGAAGCTCTAAAAGCCGACAATGATGTCCTTCAAGCTCAAAATACTAAACTCCATGCAGAGTTATTAGCATTAAAAACCACAGACTCGGGCGAGGCAGCCACGGGCGGCGGCGCCATGGGGAACCTAAAGAAAGAAAACGAACGCTGTTGGAGCAGCGACAACAGCTGCGACATCAACCTCGACATCTCAAAAACACAAGCTTCAATGCGAACGAACAACGGAGGCGGAATCAAGAACCTGTTCCCGTCGGCAGCCACAGCAGCAGCGTTTCGATCGGCTGCGATAACACAGCTGCTTCAACACGGGTCGTCGAGATCAATGGTCGACCATCCTCAAGTGATTCATCAAGAAGAAAGCTTCTCTCAAATGTTCAATGGAATGGAAGAACAACAACAAACTACACCACCTGGGTTTTGGCCTTGGAGTTCAGATCAAAATTCCCATTTTCAATGA 903 50.83 MASPHHPHSFMFQSRPPDRHEYASSTSFNNIPSCPPHLYFHDGVVPLMMKRSMSFSGVENNGCEEGNGDEGLSDDGSALGEKKKRLNLEQVKALEKSFELGNKLEPERKMQLAKALGLQPRQIAIWFQNRRARWKTKQLERDYEVLKKQFEALKADNDVLQAQNTKLHAELLALKTTDSGEAATGGGAMGNLKKENERCWSSDNSCDINLDISKTQASMRTNNGGGIKNLFPSAATAAAFRSAAITQLLQHGSSRSMVDHPQVIHQEESFSQMFNGMEEQQQTTPPGFWPWSSDQNSHFQ 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1194664 1197229 - Sed0024656.1 Sed03g0193 705680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0193 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 58 259 IPR045224 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:0045893(PANTHER)
Sed03g0193 300 Coils Coil 129 170 - -
Sed03g0193 300 FunFam Homeobox-leucine zipper protein ATHB-13 74 141 - -
Sed03g0193 300 Pfam Homeodomain 82 135 IPR001356 GO:0003677(InterPro)
Sed03g0193 300 Gene3D - 75 145 - -
Sed03g0193 300 SUPERFAMILY Homeodomain-like 73 139 IPR009057 -
Sed03g0193 300 Pfam Homeobox associated leucine zipper 137 176 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0193 300 MobiDBLite consensus disorder prediction 277 300 - -
Sed03g0193 300 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed03g0193 300 MobiDBLite consensus disorder prediction 1 27 - -
Sed03g0193 300 CDD homeodomain 82 138 IPR001356 GO:0003677(InterPro)
Sed03g0193 300 PRINTS Lambda-repressor HTH signature 117 133 IPR000047 GO:0003677(InterPro)
Sed03g0193 300 PRINTS Lambda-repressor HTH signature 108 117 IPR000047 GO:0003677(InterPro)
Sed03g0193 300 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677(InterPro)
Sed03g0193 300 SMART HOX_1 80 141 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0193 Sed-Chr3:1194664 Sed04g0693 Sed-Chr4:5541415 8.70E-44 dispersed
Sed11g1992 Sed-Chr11:34074679 Sed03g0193 Sed-Chr3:1194664 7.80E-111 wgd
Sed03g0193 Sed-Chr3:1194664 Sed04g0692 Sed-Chr4:5541415 1.80E-49 wgd
Sed03g0193 Sed-Chr3:1194664 Sed06g1545 Sed-Chr6:40270934 1.40E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37712 PF00046 Homeodomain 2.80E-15 CL0123 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0193 K09338 - csv:101212093 484.182