Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0201 | ATGGCGGAACCAGTAGCAGAGCCGAAGCCGTTGCCCGAACCCGACAAGAAGAACGAACAGAGCCTTCCGTTTCATCAACTCTTCGCTTTCGCCGACAAATTCGACTACTTTCTCATGATCCTCGGCAGCTTAGGCGCCATTGTCCACGGCTCTTCCATGCCTGTTTTCTTCCTCCTTTTCGGCCAAATGGTTAATGGTTTCGGAAAAAACCAATCCGATCTTCACAAAATGATATCTGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCTTACGCCGAGATCGCATGTTGGATGTATACAGGGGAGAGGCAAGTGAGCACATTGAGGAAGAAGTATTTAGAGGCTGTTTTGAAGCAAGATGTTGGATTCTTCGACACCGATGCGAGAACAGGGGATGTTGTTTTCAGTGTCTCAACAGATACTCTTCTTGTTCAAGATGCAATCAGCGAGAAGGTTGGTAACTTCATTCATTATCTCTCGACGTTTTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCTTGGAGATTAGCACTTTTGAGCATTGCAGTAATTCCAGGAATTGCTTTTGCTGGTGGTTTATATGCTTATACTCTAACTGGTCTCACTTCAAAGAGTAGAGAATCTTATGCTAATGCTGGTATAATTGCAGAACAGGCAATTGCTCAAGTTCGAACTGTTTATTCGTATGTTGGAGAAAGCAAAGCCCTCAATTCGTATTCGGATTCGATTCAGAATACTTTGAAAATTGGATACAAAGCAGGAATGGCTAAGGGATTGGGTCTTGGTTGTACTTATGGCATTGCTTGTATGTCTTGGGCTCTTGTCTTCTGGTACGCCGGCGTCTTCATCCGAAACGGCCAAAGCGATGGTGGGAAGGCTTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGTTTGGGGCAGTCTTTTTCAAATTTGGGAGCATTCAGTAAAGGGAAAGCAGCAGGGTACAAATTGATGGAGATAATTAACCAAAAGCCTTCAATTATTCAAGATGCTTTGGATGGGAAGTGTTTGGATAAAGTTAATGGTGATATTGAGTTTAAAGGTGTCTCCTTTAGCTACCCTTCAAGGCCGGATGTGATGATCTTCAGGGATTTCTCCATTTTCTTCCCGGCCGGGAAGACGGTTGCAGTTGTTGGCGGTAGCGGTTCCGGGAAGAGCACTGTTGTATCTCTCATTGAAAGATTTTATGATCCAATTCAAGGGCAAGTTCTGTTGGATAATGTAGACATAAAAACTCTGCAATTGAAATGGCTTCGTGATCAGATTGGATTAGTGAACCAAGAACCAGCTCTGTTTGCAACTACCATTTATGAAAACATTCTTTACGGAAAACCCGACGCGACGACAGCAGAGGTCGAAGCTGCAGCCGCTTCAGCCAATGCTCATAGCTTCATCACATTGCTCCCTAGTGGCTACAACACTCAGGTTGGGGAAAGAGGATTGCAACTCTCTGGTGGCCAAAAACAGAGAATTGCCATAGCCAGAGCAATGCTGAAGAACCCGAAAATCCTTCTCCTCGACGAAGCCACCAGTGCTCTCGATGCTGGCTCGGAGAGCATAGTTCAAGAAGCTTTAGACCGATTAATGATCGGAAGAACAACGGTGGTGGTTGCTCATCGATTATCATCCATAAGAAATGTCGATTCAATTGCAGTGATACAACAGGGGCTAGTCGTCGAAACAGGAACTCACGAAGAACTCATCGTCAAATCTGGAGCTTATTCCTCATTGATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGCCGAACACGATCCTCCAGGCTGAGCCATTCGTTATCGACAAAATCGTTAAGCCTCCGCTCCGGCAGCCTTCGAAATCTTAGCTATTCGTACAGCACCGGAGCTGATGGGAGAATCGAAATGGTCTCGAATGCCGAAACCGACCGAAACAATCCAGCCCCAGATGGCTATTTTATTCGTCTGCTTAAACTCAACGGTCCCGAATGGCCGTATTCGATAATGGGTGCTGTAGGCTCTGTTCTCTCTGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGTAACATGATCGAGGTCTTCTACTACAAAAGTTCATCGGCCATGGAAAGGAAAATCAAGGAATTTGTATTCCTCTACATAGGAATTGGGGTTTACGCAGTGGTGGCTTATCTAATTCAACATTATTTCTTTACAATCATGGGTGAAAATCTCACTACAAGAGTCAGAAGAATGATGCTGGCAGCTATTTTGAGGAATGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAAGTTAGCCACTGATGCAGCTGATGTGAAATCAGCCATTGCTGAAAGAATATCAGTGATTCTGCAAAATATGACTTCACTTTTCACTTCTTTCATTGTTGCATTCATTGTTGAATGGAGAGTTTCTCTGCTCATCCTTGCTGCCTTTCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGAGATACTGCAAAGGCCCATGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTCTTTCGCCACGAGCTTCGTGTCCCGCAGCAGCAGAGCTTTCGACGGAGCCAAATTGCGGGCATTCTTTTTGGAATCTCGCAGCTTGCTCTCTACGCGTCGGAAGCTCTTGTTCTTTGGTATGGTGTCCATTTGGTTAGCAATGGTGGATCCACATTCTCTAAGGTGATTAAAGTCTTTGTTGTCCTTGTTGTCACTGCCAATTCTGTGGCTGAGACGGTTAGTCTTGCGCCTGAGATCATTCGAGGTGGCGAATCGATCGGTTCGGTTTTCTCCATTCTCGATCGCTCGACGAGAATTGACCCTGATGATCCTGAGGCAGAGCCTGTTGAGACACTTCGTGGGGAAATTGAACTTCGACATGTTGATTTCGCGTACCCGTCTCGACCGGATGTCATGGTGTTTAAGGATTTCAGTCTTAGGATCAGGGCTGGTCAGAGTCAGGCATTGGTTGGAGCGAGTGGATCAGGGAAGAGTTCTGTGATTGCCTTGATTGAGAGATTCTACGACCCGATCGTTGGGAAAGTAATGATCGACGGGAAGGACATTCGGCGACTGAATTTGCAATCCTTGAGGTTAAAAATTGGGTTGGTACAACAAGAGCCAGCCTTATTTGCAGCAAGCATTTTAGACAACATTGCATATGGAAAAGATGGAGCAACAGAGGCTGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTGAGTGGTTTGCCTGATGGCTACAACACACCAGTTGGCGAAAGGGGCGTTCAGCTATCCGGTGGCCAAAAGCAACGCATTGCCATTGCTCGAGCCATCCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCCACAAGTGCCCTCGACGCCGAGTCAGAGTGCGTGCTACAAGAGGCTTTGGAAAGGCTGATGAGGGGACGAACCACGGTGGTCGTAGCGCATCGGTTGTCGACAATCAGAGGTGTGGACTGCATTGGTGTGGTGCAAGATGGGCGCATCATGGAGCAAGGCAGCCATAGCGAGCTGCTAAGCCGACCCGAGGGGGCTTACTCAAAGCTCTTGCAGCTGCAACACCAACACATATGA | 3753 | 46.55 | MAEPVAEPKPLPEPDKKNEQSLPFHQLFAFADKFDYFLMILGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQSDLHKMISEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPSIIQDALDGKCLDKVNGDIEFKGVSFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPIQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAASANAHSFITLLPSGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMIGRTTVVVAHRLSSIRNVDSIAVIQQGLVVETGTHEELIVKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRNNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYKSSSAMERKIKEFVFLYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAKLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQQQSFRRSQIAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRSTRIDPDDPEAEPVETLRGEIELRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASILDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYNTPVGERGVQLSGGQKQRIAIARAILKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVVQDGRIMEQGSHSELLSRPEGAYSKLLQLQHQHI | 1250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1247429 | 1254964 | - | Sed0000686.1 | Sed03g0201 | 705688 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0201 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 363 | 600 | - | - | |
| Sed03g0201 | 1250 | Gene3D | - | 998 | 1250 | IPR027417 | - | |
| Sed03g0201 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 356 | 600 | IPR027417 | - | |
| Sed03g0201 | 1250 | Pfam | ABC transporter | 1027 | 1175 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | FunFam | ABC transporter B family member 1 | 665 | 974 | - | - | |
| Sed03g0201 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 686 | 973 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed03g0201 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 363 | 599 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1010 | 1244 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | Pfam | ABC transporter transmembrane region | 686 | 956 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed03g0201 | 1250 | Pfam | ABC transporter transmembrane region | 39 | 312 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed03g0201 | 1250 | SMART | AAA_5 | 390 | 576 | IPR003593 | GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | SMART | AAA_5 | 1035 | 1221 | IPR003593 | GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | Gene3D | ABC transporter type 1, transmembrane domain | 26 | 977 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed03g0201 | 1250 | ProSitePatterns | ABC transporters family signature. | 502 | 516 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 39 | 336 | - | - | |
| Sed03g0201 | 1250 | FunFam | ABC transporter B family member 19 | 353 | 601 | - | - | |
| Sed03g0201 | 1250 | FunFam | ABC transporter B family member 19 | 998 | 1247 | - | - | |
| Sed03g0201 | 1250 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 675 | 991 | - | - | |
| Sed03g0201 | 1250 | PANTHER | ABC TRANSPORTER B FAMILY | 12 | 621 | IPR039421 | GO:0005887(PANTHER)|GO:0042626(PANTHER) | |
| Sed03g0201 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 673 | 987 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed03g0201 | 1250 | ProSitePatterns | ABC transporters family signature. | 1147 | 1161 | IPR017871 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | Gene3D | - | 353 | 601 | IPR027417 | - | |
| Sed03g0201 | 1250 | FunFam | ABC transporter B family member 1 | 26 | 361 | - | - | |
| Sed03g0201 | 1250 | Pfam | ABC transporter | 383 | 530 | IPR003439 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Sed03g0201 | 1250 | SUPERFAMILY | ABC transporter transmembrane region | 27 | 344 | IPR036640 | GO:0005524(InterPro)|GO:0016020(InterPro) | |
| Sed03g0201 | 1250 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 40 | 328 | IPR011527 | GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro) | |
| Sed03g0201 | 1250 | CDD | ABC_MTABC3_MDL1_MDL2 | 1008 | 1246 | - | - | |
| Sed03g0201 | 1250 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 998 | 1246 | IPR027417 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed02g0627 | Sed-Chr2:44084880 | Sed03g0201 | Sed-Chr3:1247429 | 0.00E+00 | dispersed | |
| Sed03g0201 | Sed-Chr3:1247429 | Sed04g1380 | Sed-Chr4:28162001 | 0.00E+00 | dispersed | |
| Sed11g2000 | Sed-Chr11:34177996 | Sed03g0201 | Sed-Chr3:1247429 | 0.00E+00 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0201 | K05658 | - | csv:101212585 | 2218.35 |