Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0201 ATGGCGGAACCAGTAGCAGAGCCGAAGCCGTTGCCCGAACCCGACAAGAAGAACGAACAGAGCCTTCCGTTTCATCAACTCTTCGCTTTCGCCGACAAATTCGACTACTTTCTCATGATCCTCGGCAGCTTAGGCGCCATTGTCCACGGCTCTTCCATGCCTGTTTTCTTCCTCCTTTTCGGCCAAATGGTTAATGGTTTCGGAAAAAACCAATCCGATCTTCACAAAATGATATCTGAAGTCTCTAAGTATGCTCTGTATTTTGTCTACTTGGGTCTCATTGTCTGTTTCTCATCTTACGCCGAGATCGCATGTTGGATGTATACAGGGGAGAGGCAAGTGAGCACATTGAGGAAGAAGTATTTAGAGGCTGTTTTGAAGCAAGATGTTGGATTCTTCGACACCGATGCGAGAACAGGGGATGTTGTTTTCAGTGTCTCAACAGATACTCTTCTTGTTCAAGATGCAATCAGCGAGAAGGTTGGTAACTTCATTCATTATCTCTCGACGTTTTTGGCTGGATTGGTGGTGGGTTTTGTGTCAGCTTGGAGATTAGCACTTTTGAGCATTGCAGTAATTCCAGGAATTGCTTTTGCTGGTGGTTTATATGCTTATACTCTAACTGGTCTCACTTCAAAGAGTAGAGAATCTTATGCTAATGCTGGTATAATTGCAGAACAGGCAATTGCTCAAGTTCGAACTGTTTATTCGTATGTTGGAGAAAGCAAAGCCCTCAATTCGTATTCGGATTCGATTCAGAATACTTTGAAAATTGGATACAAAGCAGGAATGGCTAAGGGATTGGGTCTTGGTTGTACTTATGGCATTGCTTGTATGTCTTGGGCTCTTGTCTTCTGGTACGCCGGCGTCTTCATCCGAAACGGCCAAAGCGATGGTGGGAAGGCTTTCACTGCTATATTCTCCGCCATCGTCGGTGGCATGAGTTTGGGGCAGTCTTTTTCAAATTTGGGAGCATTCAGTAAAGGGAAAGCAGCAGGGTACAAATTGATGGAGATAATTAACCAAAAGCCTTCAATTATTCAAGATGCTTTGGATGGGAAGTGTTTGGATAAAGTTAATGGTGATATTGAGTTTAAAGGTGTCTCCTTTAGCTACCCTTCAAGGCCGGATGTGATGATCTTCAGGGATTTCTCCATTTTCTTCCCGGCCGGGAAGACGGTTGCAGTTGTTGGCGGTAGCGGTTCCGGGAAGAGCACTGTTGTATCTCTCATTGAAAGATTTTATGATCCAATTCAAGGGCAAGTTCTGTTGGATAATGTAGACATAAAAACTCTGCAATTGAAATGGCTTCGTGATCAGATTGGATTAGTGAACCAAGAACCAGCTCTGTTTGCAACTACCATTTATGAAAACATTCTTTACGGAAAACCCGACGCGACGACAGCAGAGGTCGAAGCTGCAGCCGCTTCAGCCAATGCTCATAGCTTCATCACATTGCTCCCTAGTGGCTACAACACTCAGGTTGGGGAAAGAGGATTGCAACTCTCTGGTGGCCAAAAACAGAGAATTGCCATAGCCAGAGCAATGCTGAAGAACCCGAAAATCCTTCTCCTCGACGAAGCCACCAGTGCTCTCGATGCTGGCTCGGAGAGCATAGTTCAAGAAGCTTTAGACCGATTAATGATCGGAAGAACAACGGTGGTGGTTGCTCATCGATTATCATCCATAAGAAATGTCGATTCAATTGCAGTGATACAACAGGGGCTAGTCGTCGAAACAGGAACTCACGAAGAACTCATCGTCAAATCTGGAGCTTATTCCTCATTGATTCGATTCCAAGAAATGGTTCGAAACAGAGAATTCTCAAACCCATCGACCCGCCGAACACGATCCTCCAGGCTGAGCCATTCGTTATCGACAAAATCGTTAAGCCTCCGCTCCGGCAGCCTTCGAAATCTTAGCTATTCGTACAGCACCGGAGCTGATGGGAGAATCGAAATGGTCTCGAATGCCGAAACCGACCGAAACAATCCAGCCCCAGATGGCTATTTTATTCGTCTGCTTAAACTCAACGGTCCCGAATGGCCGTATTCGATAATGGGTGCTGTAGGCTCTGTTCTCTCTGGTTTCATCAGTCCAACATTCGCCATTGTTATGAGTAACATGATCGAGGTCTTCTACTACAAAAGTTCATCGGCCATGGAAAGGAAAATCAAGGAATTTGTATTCCTCTACATAGGAATTGGGGTTTACGCAGTGGTGGCTTATCTAATTCAACATTATTTCTTTACAATCATGGGTGAAAATCTCACTACAAGAGTCAGAAGAATGATGCTGGCAGCTATTTTGAGGAATGAAGTGGGATGGTTCGATGAGGAAGAACACAACTCGAGTTTAGTAGCAGCAAAGTTAGCCACTGATGCAGCTGATGTGAAATCAGCCATTGCTGAAAGAATATCAGTGATTCTGCAAAATATGACTTCACTTTTCACTTCTTTCATTGTTGCATTCATTGTTGAATGGAGAGTTTCTCTGCTCATCCTTGCTGCCTTTCCTCTACTGGTTCTTGCCAACATGGCTCAGCAACTTTCTTTGAAAGGATTTGCTGGAGATACTGCAAAGGCCCATGCAAAGACAAGTATGATTGCAGGGGAAGGTGTGAGCAATATCAGAACAGTGGCTGCCTTCAATGCTCAAGACAAGATCCTTTCTCTCTTTCGCCACGAGCTTCGTGTCCCGCAGCAGCAGAGCTTTCGACGGAGCCAAATTGCGGGCATTCTTTTTGGAATCTCGCAGCTTGCTCTCTACGCGTCGGAAGCTCTTGTTCTTTGGTATGGTGTCCATTTGGTTAGCAATGGTGGATCCACATTCTCTAAGGTGATTAAAGTCTTTGTTGTCCTTGTTGTCACTGCCAATTCTGTGGCTGAGACGGTTAGTCTTGCGCCTGAGATCATTCGAGGTGGCGAATCGATCGGTTCGGTTTTCTCCATTCTCGATCGCTCGACGAGAATTGACCCTGATGATCCTGAGGCAGAGCCTGTTGAGACACTTCGTGGGGAAATTGAACTTCGACATGTTGATTTCGCGTACCCGTCTCGACCGGATGTCATGGTGTTTAAGGATTTCAGTCTTAGGATCAGGGCTGGTCAGAGTCAGGCATTGGTTGGAGCGAGTGGATCAGGGAAGAGTTCTGTGATTGCCTTGATTGAGAGATTCTACGACCCGATCGTTGGGAAAGTAATGATCGACGGGAAGGACATTCGGCGACTGAATTTGCAATCCTTGAGGTTAAAAATTGGGTTGGTACAACAAGAGCCAGCCTTATTTGCAGCAAGCATTTTAGACAACATTGCATATGGAAAAGATGGAGCAACAGAGGCTGAAGTAATAGAGGCAGCAAGAGCAGCCAATGTGCATGGCTTTGTGAGTGGTTTGCCTGATGGCTACAACACACCAGTTGGCGAAAGGGGCGTTCAGCTATCCGGTGGCCAAAAGCAACGCATTGCCATTGCTCGAGCCATCCTCAAGGACCCCACAATCCTCCTCCTCGACGAGGCCACAAGTGCCCTCGACGCCGAGTCAGAGTGCGTGCTACAAGAGGCTTTGGAAAGGCTGATGAGGGGACGAACCACGGTGGTCGTAGCGCATCGGTTGTCGACAATCAGAGGTGTGGACTGCATTGGTGTGGTGCAAGATGGGCGCATCATGGAGCAAGGCAGCCATAGCGAGCTGCTAAGCCGACCCGAGGGGGCTTACTCAAAGCTCTTGCAGCTGCAACACCAACACATATGA 3753 46.55 MAEPVAEPKPLPEPDKKNEQSLPFHQLFAFADKFDYFLMILGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQSDLHKMISEVSKYALYFVYLGLIVCFSSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDVVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDSIQNTLKIGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQSDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGYKLMEIINQKPSIIQDALDGKCLDKVNGDIEFKGVSFSYPSRPDVMIFRDFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPIQGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTIYENILYGKPDATTAEVEAAAASANAHSFITLLPSGYNTQVGERGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMIGRTTVVVAHRLSSIRNVDSIAVIQQGLVVETGTHEELIVKSGAYSSLIRFQEMVRNREFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYSYSTGADGRIEMVSNAETDRNNPAPDGYFIRLLKLNGPEWPYSIMGAVGSVLSGFISPTFAIVMSNMIEVFYYKSSSAMERKIKEFVFLYIGIGVYAVVAYLIQHYFFTIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAAKLATDAADVKSAIAERISVILQNMTSLFTSFIVAFIVEWRVSLLILAAFPLLVLANMAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQDKILSLFRHELRVPQQQSFRRSQIAGILFGISQLALYASEALVLWYGVHLVSNGGSTFSKVIKVFVVLVVTANSVAETVSLAPEIIRGGESIGSVFSILDRSTRIDPDDPEAEPVETLRGEIELRHVDFAYPSRPDVMVFKDFSLRIRAGQSQALVGASGSGKSSVIALIERFYDPIVGKVMIDGKDIRRLNLQSLRLKIGLVQQEPALFAASILDNIAYGKDGATEAEVIEAARAANVHGFVSGLPDGYNTPVGERGVQLSGGQKQRIAIARAILKDPTILLLDEATSALDAESECVLQEALERLMRGRTTVVVAHRLSTIRGVDCIGVVQDGRIMEQGSHSELLSRPEGAYSKLLQLQHQHI 1250
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 1247429 1254964 - Sed0000686.1 Sed03g0201 705688
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0201 1250 CDD ABC_MTABC3_MDL1_MDL2 363 600 - -
Sed03g0201 1250 Gene3D - 998 1250 IPR027417 -
Sed03g0201 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 600 IPR027417 -
Sed03g0201 1250 Pfam ABC transporter 1027 1175 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g0201 1250 FunFam ABC transporter B family member 1 665 974 - -
Sed03g0201 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 973 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed03g0201 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 363 599 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g0201 1250 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1010 1244 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g0201 1250 Pfam ABC transporter transmembrane region 686 956 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed03g0201 1250 Pfam ABC transporter transmembrane region 39 312 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed03g0201 1250 SMART AAA_5 390 576 IPR003593 GO:0016887(InterPro)
Sed03g0201 1250 SMART AAA_5 1035 1221 IPR003593 GO:0016887(InterPro)
Sed03g0201 1250 Gene3D ABC transporter type 1, transmembrane domain 26 977 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed03g0201 1250 ProSitePatterns ABC transporters family signature. 502 516 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g0201 1250 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Sed03g0201 1250 FunFam ABC transporter B family member 19 353 601 - -
Sed03g0201 1250 FunFam ABC transporter B family member 19 998 1247 - -
Sed03g0201 1250 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 991 - -
Sed03g0201 1250 PANTHER ABC TRANSPORTER B FAMILY 12 621 IPR039421 GO:0005887(PANTHER)|GO:0042626(PANTHER)
Sed03g0201 1250 SUPERFAMILY ABC transporter transmembrane region 673 987 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed03g0201 1250 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g0201 1250 Gene3D - 353 601 IPR027417 -
Sed03g0201 1250 FunFam ABC transporter B family member 1 26 361 - -
Sed03g0201 1250 Pfam ABC transporter 383 530 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g0201 1250 SUPERFAMILY ABC transporter transmembrane region 27 344 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Sed03g0201 1250 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 40 328 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Sed03g0201 1250 CDD ABC_MTABC3_MDL1_MDL2 1008 1246 - -
Sed03g0201 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 998 1246 IPR027417 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0627 Sed-Chr2:44084880 Sed03g0201 Sed-Chr3:1247429 0.00E+00 dispersed
Sed03g0201 Sed-Chr3:1247429 Sed04g1380 Sed-Chr4:28162001 0.00E+00 dispersed
Sed11g2000 Sed-Chr11:34177996 Sed03g0201 Sed-Chr3:1247429 0.00E+00 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0201 K05658 - csv:101212585 2218.35