Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0208 ATGAGGAAGCGCCAAGTTGTGCTTAGAAGATCAGAAGAACCTTCAAGAGACACTGTGGCTTCATCCTTCACAGTAAGAAGTGTTAGATATGGAGAGTGCCAAAAGAATCATGCCGCCGGGGTCGGAGGGTACGCTGTCGATGGGTGTCGGGAATTCATGGCGAGCGGGGACGAAGGGACGACGGCTGCACTCACCTGCGCCGCCTGCGGTTGCCATCGAAACTTCCATAGAAGACAAGTTGGAACTGAGATTGTCTGTGATTGTTCTTCATCTCCCTCAAATGAAACTTGA 291 51.2 MRKRQVVLRRSEEPSRDTVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEIVCDCSSSPSNET 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1296996 1297792 - Sed0023102.1 Sed03g0208 705695

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0208 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Sed03g0208 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Sed03g0208 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 80 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed03g0208 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0208 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0208 Sed-Chr3:1296996 Sed08g0212 Sed-Chr8:1231414 9.30E-24 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed03g0209 Sed-Chr3:1309083 3.70E-12 tandem
Sed01g2350 Sed-Chr1:17719556 Sed03g0208 Sed-Chr3:1296996 1.30E-25 wgd
Sed11g2004 Sed-Chr11:34225521 Sed03g0208 Sed-Chr3:1296996 4.90E-41 wgd
Sed03g0208 Sed-Chr3:1296996 Sed06g0625 Sed-Chr6:5695001 1.30E-12 wgd
Sed03g0208 Sed-Chr3:1296996 Sed06g1529 Sed-Chr6:40060791 1.10E-13 wgd
Sed03g0208 Sed-Chr3:1296996 Sed08g2068 Sed-Chr8:34911617 2.40E-24 wgd
Sed03g0208 Sed-Chr3:1296996 Sed08g1335 Sed-Chr8:27834420 1.90E-13 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed03g0208 . 1 93 Zinc finger-homeobox gene family AT3G28917 79.4 4.5e-37 151.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000730 3 3 2 3 4 3 2 3 3 2 3 3 4 3 3 5 3 6 4 3 3 3 3 1 3 3 3 6 3 1 94
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37715 PF04770 ZF-HD_dimer 3.30E-30 No_clan Sed TF