Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0208 ATGAGGAAGCGCCAAGTTGTGCTTAGAAGATCAGAAGAACCTTCAAGAGACACTGTGGCTTCATCCTTCACAGTAAGAAGTGTTAGATATGGAGAGTGCCAAAAGAATCATGCCGCCGGGGTCGGAGGGTACGCTGTCGATGGGTGTCGGGAATTCATGGCGAGCGGGGACGAAGGGACGACGGCTGCACTCACCTGCGCCGCCTGCGGTTGCCATCGAAACTTCCATAGAAGACAAGTTGGAACTGAGATTGTCTGTGATTGTTCTTCATCTCCCTCAAATGAAACTTGA 291 51.2 MRKRQVVLRRSEEPSRDTVASSFTVRSVRYGECQKNHAAGVGGYAVDGCREFMASGDEGTTAALTCAACGCHRNFHRRQVGTEIVCDCSSSPSNET 96
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1296996 1297792 - Sed0023102.1 Sed03g0208 705695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0208 96 Pfam ZF-HD protein dimerisation region 28 80 IPR006456 -
Sed03g0208 96 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 30 79 IPR006456 -
Sed03g0208 96 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 18 80 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed03g0208 96 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 29 79 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0208 Sed-Chr3:1296996 Sed08g0212 Sed-Chr8:1231414 9.30E-24 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed03g0209 Sed-Chr3:1309083 3.70E-12 tandem
Sed01g2350 Sed-Chr1:17719556 Sed03g0208 Sed-Chr3:1296996 1.30E-25 wgd
Sed11g2004 Sed-Chr11:34225521 Sed03g0208 Sed-Chr3:1296996 4.90E-41 wgd
Sed03g0208 Sed-Chr3:1296996 Sed06g0625 Sed-Chr6:5695001 1.30E-12 wgd
Sed03g0208 Sed-Chr3:1296996 Sed06g1529 Sed-Chr6:40060791 1.10E-13 wgd
Sed03g0208 Sed-Chr3:1296996 Sed08g2068 Sed-Chr8:34911617 2.40E-24 wgd
Sed03g0208 Sed-Chr3:1296996 Sed08g1335 Sed-Chr8:27834420 1.90E-13 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37715 PF04770 ZF-HD_dimer 3.30E-30 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0208 - - - 0.0