Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0209 ATGTTTAGAGAAGTTTGTGTTGTTGAGAGAGCCATGGATTTAGCCCCAACTCCAATCACTACTAGTAGTAATAACACCAAATCTCCGGAGCCGGAGACCGATACTCCGACCAGAATCCCGCCGTCTTCCGCCAAATCGCTGCCGTTCAGCAACGGCTTTCTCAAGCGCCACCACGCCAACCACCGCCAACCACCGCCGCAACCGGCGGTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCAGTTTAGGCGCTCACGCGCTCGACGGATGCGGCGAATTTATGCCGTCGCCGTCCTCCGTGCCGGCCGATCCCACTTCCCTCAAGTGTGCCGCCTGCGGCTGTCACCGGAATTTCCACCGCCGTGAGCCGGAGGATTCAATTTCGCCGTTGGCGATTAGTACTCCGGCGACCCATGTTATTGAGTATCAGCCGCACCACCGCCACCACCCGCCGCCGCCCGCCGGTAACAGGAGTCCAAATTCGGCGTCTCCGCCGCCGATCTCCTCGTCGTACTACCCATCGGCGCCGCACATGTTACTGGCGCTCTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAATCCCCACCCGAATGCCCGGAAACGATTCAGGACGAAATTTACAAACGAACAGAAGGAAAAAATGTTCAATTTTGCTGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTAGAGATTTTTGCAATCAAGTTGGAGTGGAAAGAGGGGTTTTCAAAGTATGGATGCATAACAACAAGAACACCATGGCTAAAAAGACCGACGACTCCAATGGCGTCGCCGCCGCCATCCCCACCGCCGTCGCCGACGCTGCCGAAACCGCCGCCGTCAACAAAATCGAAAATGGAGCAGATGGGGGCTTCCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 936 54.91 MFREVCVVERAMDLAPTPITTSSNNTKSPEPETDTPTRIPPSSAKSLPFSNGFLKRHHANHRQPPPQPAVVTYKECLKNHAASLGAHALDGCGEFMPSPSSVPADPTSLKCAACGCHRNFHRREPEDSISPLAISTPATHVIEYQPHHRHHPPPPAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENPHPNARKRFRTKFTNEQKEKMFNFAERVGWKMQKRDEDLVRDFCNQVGVERGVFKVWMHNNKNTMAKKTDDSNGVAAAIPTAVADAAETAAVNKIENGADGGFHMHVGSNGSSSSS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1309083 1310639 - Sed0013684.1 Sed03g0209 705696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0209 311 MobiDBLite consensus disorder prediction 145 172 - -
Sed03g0209 311 Gene3D - 193 263 - -
Sed03g0209 311 SUPERFAMILY Homeodomain-like 192 262 IPR009057 -
Sed03g0209 311 NCBIfam homeobox domain, ZF-HD class 201 258 IPR006455 -
Sed03g0209 311 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 259 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed03g0209 311 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 72 124 IPR006456 -
Sed03g0209 311 FunFam Zinc-finger homeodomain protein 2 192 262 - -
Sed03g0209 311 MobiDBLite consensus disorder prediction 16 48 - -
Sed03g0209 311 Pfam ZF-HD protein dimerisation region 71 125 IPR006456 -
Sed03g0209 311 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 124 IPR006456 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0209 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1789 Sed-Chr1:13151324 Sed03g0209 Sed-Chr3:1309083 1.10E-30 dispersed
Sed03g0209 Sed-Chr3:1309083 Sed08g1335 Sed-Chr8:27834420 1.70E-66 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed03g0209 Sed-Chr3:1309083 3.70E-12 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed04g0182 . 49 237 ZF-HD Transcription Factor Family AT2G02540 52.7 7.9e-40 162.2
Sed04g0182 . 1 234 ZF-HD Transcription Factor Family AT4G24660 50.4 1.8e-52 203.8
Sed07g1780 . 60 207 ZF-HD Transcription Factor Family AT4G24660 52.7 1.4e-41 167.5
Sed03g0209 . 12 270 ZF-HD Transcription Factor Family AT5G39760 53.1 1.3e-51 201.4
Sed08g1335 . 31 256 ZF-HD Transcription Factor Family AT5G39760 56.4 7.2e-47 185.7
Sed06g0625 . 30 273 ZF-HD Transcription Factor Family AT5G39760 58.4 1.4e-45 181.4
Sed04g0182 . 47 238 ZF-HD Transcription Factor Family AT5G65410 55.7 8.1e-44 175.3
Sed08g1335 . 62 252 ZF-HD Transcription Factor Family AT1G69600 50.5 7.5e-46 181.8
Sed03g0209 . 12 257 ZF-HD Transcription Factor Family AT5G15210 57.3 1.3e-51 201.1
Sed08g1335 . 13 263 ZF-HD Transcription Factor Family AT5G15210 56.2 2.3e-51 200.3
Sed06g0625 . 23 286 ZF-HD Transcription Factor Family AT5G15210 50.4 2.1e-44 177.2
Sed02g0002 . 75 279 ZF-HD Transcription Factor Family AT1G14440 52.0 2.2e-50 197.2
Sed08g1335 . 23 251 ZF-HD Transcription Factor Family AT3G28920 64.0 1.7e-58 224.2
Sed03g0209 . 10 259 ZF-HD Transcription Factor Family AT3G28920 57.6 3.8e-58 223.0
Sed06g0625 . 22 250 ZF-HD Transcription Factor Family AT3G28920 60.2 1.5e-51 201.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001346 3 2 3 3 3 2 4 2 2 2 2 2 3 2 2 3 2 4 4 2 2 2 3 2 2 3 2 3 2 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37716 PF04770 ZF-HD_dimer 4.30E-29 No_clan Sed TF