Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0209 ATGTTTAGAGAAGTTTGTGTTGTTGAGAGAGCCATGGATTTAGCCCCAACTCCAATCACTACTAGTAGTAATAACACCAAATCTCCGGAGCCGGAGACCGATACTCCGACCAGAATCCCGCCGTCTTCCGCCAAATCGCTGCCGTTCAGCAACGGCTTTCTCAAGCGCCACCACGCCAACCACCGCCAACCACCGCCGCAACCGGCGGTTGTTACTTACAAAGAATGTCTCAAAAATCACGCCGCCAGTTTAGGCGCTCACGCGCTCGACGGATGCGGCGAATTTATGCCGTCGCCGTCCTCCGTGCCGGCCGATCCCACTTCCCTCAAGTGTGCCGCCTGCGGCTGTCACCGGAATTTCCACCGCCGTGAGCCGGAGGATTCAATTTCGCCGTTGGCGATTAGTACTCCGGCGACCCATGTTATTGAGTATCAGCCGCACCACCGCCACCACCCGCCGCCGCCCGCCGGTAACAGGAGTCCAAATTCGGCGTCTCCGCCGCCGATCTCCTCGTCGTACTACCCATCGGCGCCGCACATGTTACTGGCGCTCTCGGCCGGGTTGTCGGGTCCTCCGCCGGAAAATCCCCACCCGAATGCCCGGAAACGATTCAGGACGAAATTTACAAACGAACAGAAGGAAAAAATGTTCAATTTTGCTGAACGAGTTGGATGGAAAATGCAAAAGAGAGATGAAGATTTGGTTAGAGATTTTTGCAATCAAGTTGGAGTGGAAAGAGGGGTTTTCAAAGTATGGATGCATAACAACAAGAACACCATGGCTAAAAAGACCGACGACTCCAATGGCGTCGCCGCCGCCATCCCCACCGCCGTCGCCGACGCTGCCGAAACCGCCGCCGTCAACAAAATCGAAAATGGAGCAGATGGGGGCTTCCATATGCATGTTGGCTCAAATGGGTCATCTTCTTCTTCTTGA 936 54.91 MFREVCVVERAMDLAPTPITTSSNNTKSPEPETDTPTRIPPSSAKSLPFSNGFLKRHHANHRQPPPQPAVVTYKECLKNHAASLGAHALDGCGEFMPSPSSVPADPTSLKCAACGCHRNFHRREPEDSISPLAISTPATHVIEYQPHHRHHPPPPAGNRSPNSASPPPISSSYYPSAPHMLLALSAGLSGPPPENPHPNARKRFRTKFTNEQKEKMFNFAERVGWKMQKRDEDLVRDFCNQVGVERGVFKVWMHNNKNTMAKKTDDSNGVAAAIPTAVADAAETAAVNKIENGADGGFHMHVGSNGSSSSS 311
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1309083 1310639 - Sed0013684.1 Sed03g0209 705696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0209 311 MobiDBLite consensus disorder prediction 145 172 - -
Sed03g0209 311 Gene3D - 193 263 - -
Sed03g0209 311 SUPERFAMILY Homeodomain-like 192 262 IPR009057 -
Sed03g0209 311 NCBIfam homeobox domain, ZF-HD class 201 258 IPR006455 -
Sed03g0209 311 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 55 259 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0050793(PANTHER)
Sed03g0209 311 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 72 124 IPR006456 -
Sed03g0209 311 FunFam Zinc-finger homeodomain protein 2 192 262 - -
Sed03g0209 311 MobiDBLite consensus disorder prediction 16 48 - -
Sed03g0209 311 Pfam ZF-HD protein dimerisation region 71 125 IPR006456 -
Sed03g0209 311 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 73 124 IPR006456 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1789 Sed-Chr1:13151324 Sed03g0209 Sed-Chr3:1309083 1.10E-30 dispersed
Sed03g0209 Sed-Chr3:1309083 Sed08g1335 Sed-Chr8:27834420 1.70E-66 dispersed
Sed03g0208 Sed-Chr3:1296996 Sed03g0209 Sed-Chr3:1309083 3.70E-12 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37716 PF04770 ZF-HD_dimer 4.30E-29 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0209 - - - 0.0