Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0216 ATGAAAATTATGCAAGGGAATTTCTCATTATTAATGGGTTTATTACTTAAAATTGTAGTGGGTGTTATTTTAATTGCATCATGTGTTAATGGAGATTATGGTGGTTGGATCAATGCTCATGCCACATTCTATGGTGGAAGTGATGCTTCAGGGACAATGGGGGGGGCATGTGGATATGGTAACTTGAACAGCCAGGGGTATGGGATGAACACCGCGGCGCTGAGCACCGCGCTGTTCGACAATGGGCTGAGCTGCGGCGCCTGCTTTGAGCTGCAGTGTGTCAACGACCCGCAGTGGTGTATTCCAGGCACTATTACGGTTACTGCCACTAATTTTTGCCCTCCCGGCGGCTGTTGTGACCCTCCCAACCACCATTTTGACCTTTCTCAGCCCATATTCGAGCACATCGCCCAATACCGTGCTGGGATCATCCCTGTCACTTATCGAAGGGTGAGTTGCGTGAGAAGTGGTGGAATAAGGTTCACAATCAACGGCCACTCATACTTCAACTTGGTGCTGGTGACGAACGTCGCCGGCGCGGGAGATATTCATGCGGTGTCGATCAAAGGTTCGAATGGACAATGGCAACCCATGTCCAGAAATTGGGGCCAAAACTGGCAATCAAACTCCTATCTCAACGGACAAAGCCTCTCCTTTCTGGTCACTGCCAGCGACGGGCGCCAAGTCCTGTCCTCTAACATCGCTCCTGCGGGCTGGTCCTTCGGACAGACCTATGTCGGCGGACAGTTTGGCTGA 756 51.06 MKIMQGNFSLLMGLLLKIVVGVILIASCVNGDYGGWINAHATFYGGSDASGTMGGACGYGNLNSQGYGMNTAALSTALFDNGLSCGACFELQCVNDPQWCIPGTITVTATNFCPPGGCCDPPNHHFDLSQPIFEHIAQYRAGIIPVTYRRVSCVRSGGIRFTINGHSYFNLVLVTNVAGAGDIHAVSIKGSNGQWQPMSRNWGQNWQSNSYLNGQSLSFLVTASDGRQVLSSNIAPAGWSFGQTYVGGQFG 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1374385 1376432 - Sed0018515.1 Sed03g0216 705703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0216 251 CDD DPBB_EXPA_N 35 153 - -
Sed03g0216 251 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 158 IPR007112 -
Sed03g0216 251 SUPERFAMILY PHL pollen allergen 155 246 IPR036749 -
Sed03g0216 251 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
Sed03g0216 251 Pfam Lytic transglycolase 71 148 IPR009009 -
Sed03g0216 251 Gene3D - 158 250 IPR036749 -
Sed03g0216 251 SMART dpbb_1 71 148 IPR007112 -
Sed03g0216 251 SUPERFAMILY Barwin-like endoglucanases 23 176 IPR036908 -
Sed03g0216 251 PANTHER EXPANSIN-A15 22 250 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 168 247 IPR007117 -
Sed03g0216 251 Pfam Expansin C-terminal domain 159 236 IPR007117 -
Sed03g0216 251 Gene3D - 24 153 IPR036908 -
Sed03g0216 251 FunFam Expansin 158 250 - -
Sed03g0216 251 PRINTS Expansin signature 116 133 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 157 169 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 204 225 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 133 146 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 66 80 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 105 115 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 169 190 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 93 104 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin signature 233 249 IPR002963 GO:0009664(InterPro)
Sed03g0216 251 PRINTS Expansin/Lol pI family signature 233 247 IPR007118 GO:0005576(InterPro)
Sed03g0216 251 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576(InterPro)
Sed03g0216 251 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576(InterPro)
Sed03g0216 251 PRINTS Expansin/Lol pI family signature 141 157 IPR007118 GO:0005576(InterPro)
Sed03g0216 251 PRINTS Expansin/Lol pI family signature 75 93 IPR007118 GO:0005576(InterPro)
Sed03g0216 251 PRINTS Expansin/Lol pI family signature 195 209 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0216 Sed-Chr3:1374385 Sed07g1937 Sed-Chr7:33891417 2.10E-104 dispersed
Sed11g2008 Sed-Chr11:34240098 Sed03g0216 Sed-Chr3:1374385 3.70E-125 wgd
Sed03g0216 Sed-Chr3:1374385 Sed06g1515 Sed-Chr6:39836514 1.90E-100 wgd
Sed03g0216 Sed-Chr3:1374385 Sed08g2079 Sed-Chr8:34965760 1.30E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0216 K20628 - csv:101220358 445.662