Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0237 | ATGGCGACCCACAACAAGGACGATGGCTCTGCAACACCTCCGTTGCAGCGCCGCCCCACCATCACCCTTCCGCCCCGCCCTTCCATGGAGGCCTTCTTCTCCGCCGGACCCGCCGGAGTCAGCCCCGGCCCCTTGACCCTCCTCTCCACTTTCTTCCCCGACGCCGCCGTTGACTCCCCGTCTTTCTCCCAGCTCCTCGCCGGCGCTATGGCCTCTCCCATGGCTCTGCCCTTCTCCTCCGAGTTCGAATTCGGGCTCAAGCATCCCAAGCCCCCCCTCAACTTGCTCGTGGCTCGCTCTCCCTTGTTCTCCGTCCCGCCTGGCCTCAGCCCCTCTGGGTTGCTTAATTCCCCCGGCTTCTATCCTCCTCAGAGTCCATTTGGAATGTCGCACCAGCAGGCATTGGCTCAGGTCACTGCTCAAGCAGCACTGACACATTCTCATATGCATCTACCGCAAGTTGAATATCAACAATCTTTGGTATCAGGTCCTATGGAACCGTTGACACGCGATCCATCATTTACTCTCGATGAAGCATCTCAACTGTCAATAGTCCCCATCATCTCAGACACAAAAAGTCTCATTGCGGAATCGACAGAAGCCTCTCATTCTGAAAGAAAATATCAACCTCCTCCTTCTCATACCTCTGATAAACCTGCAGATGACGGATACAACTGGCGTAAATATGGACAGAAGCTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACGCATTTGAATTGCCCTGTGAAAAAGAAGATTGAGCGCTCGCCTGATGGTCAAATTACTGAGATTATTTACAAAAGCCAGCACAACCATGACCCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCAACTGGGAGTACAAACTCTTTGTTGAAGCCTGAAAGTGAATCCCAAAATCAAGCTTTAATTTTGAACAAGACAAGCGAAAATGTGCGAATAGGGTCTAGTAACAGTGAAGAACAAGCTGATACAGGGATAACAGAAGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGATGCAGGGACGTCTGGTGTGCTTTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACTAGAAGTGAGGTCGACCTGTTAGATGACGGATATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCCAATCCCAGGAGCTACTACAAATGCACTAGTACTGGATGCAATGTCCGAAAGCATGTCGAAAGATCCTCAACTGATGCGAAAGCTGTCGTAACTACATATGAAGGGAAACATAATCACGATGTTCCTGCAGCTAGAAACAGCAGCCACCACTCAGCCAACAATACTGTGCCCCAAATCAAACCTCATAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTCGAAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA | 1485 | 48.89 | MATHNKDDGSATPPLQRRPTITLPPRPSMEAFFSAGPAGVSPGPLTLLSTFFPDAAVDSPSFSQLLAGAMASPMALPFSSEFEFGLKHPKPPLNLLVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALTHSHMHLPQVEYQQSLVSGPMEPLTRDPSFTLDEASQLSIVPIISDTKSLIAESTEASHSERKYQPPPSHTSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKSQHNHDPPPANKRARDNSEPTGSTNSLLKPESESQNQALILNKTSENVRIGSSNSEEQADTGITEDRDEDEPNPKRQNIDAGTSGVLLSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCNVRKHVERSSTDAKAVVTTYEGKHNHDVPAARNSSHHSANNTVPQIKPHKVVAQKHPLLKEMEFETNDQRPAVLRLKEEQITV | 494 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 1472733 | 1476760 | - | Sed0015144.1 | Sed03g0237 | 705724 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0237 | 494 | ProSiteProfiles | WRKY domain profile. | 215 | 279 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | MobiDBLite | consensus disorder prediction | 287 | 330 | - | - | |
Sed03g0237 | 494 | SUPERFAMILY | WRKY DNA-binding domain | 217 | 279 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | ProSiteProfiles | WRKY domain profile. | 375 | 440 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | MobiDBLite | consensus disorder prediction | 196 | 224 | - | - | |
Sed03g0237 | 494 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 172 | 460 | IPR044810 | GO:0003700(InterPro) | |
Sed03g0237 | 494 | MobiDBLite | consensus disorder prediction | 271 | 359 | - | - | |
Sed03g0237 | 494 | Pfam | WRKY DNA -binding domain | 221 | 277 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | Pfam | WRKY DNA -binding domain | 381 | 438 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | Gene3D | WRKY domain | 365 | 441 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | Gene3D | WRKY domain | 212 | 280 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | FunFam | WRKY transcription factor 33 | 367 | 433 | - | - | |
Sed03g0237 | 494 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Sed03g0237 | 494 | FunFam | WRKY transcription factor | 209 | 280 | - | - | |
Sed03g0237 | 494 | SMART | WRKY_cls | 380 | 439 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | SMART | WRKY_cls | 220 | 278 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed03g0237 | 494 | SUPERFAMILY | WRKY DNA-binding domain | 372 | 440 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0237 | Sed-Chr3:1472733 | Sed11g2033 | Sed-Chr11:34377014 | 3.00E-227 | dispersed | |
Sed03g0237 | Sed-Chr3:1472733 | Sed03g0238 | Sed-Chr3:1473995 | 2.20E-230 | tandem | |
Sed08g0583 | Sed-Chr8:3970225 | Sed03g0237 | Sed-Chr3:1472733 | 2.60E-41 | transposed | |
Sed11g2032 | Sed-Chr11:34377014 | Sed03g0237 | Sed-Chr3:1472733 | 3.00E-227 | wgd | |
Sed03g0237 | Sed-Chr3:1472733 | Sed06g1497 | Sed-Chr6:39672743 | 4.70E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37720 | PF03106 | WRKY | 3.90E-25 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0237 | - | - | - | 0.0 |