Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0237 ATGGCGACCCACAACAAGGACGATGGCTCTGCAACACCTCCGTTGCAGCGCCGCCCCACCATCACCCTTCCGCCCCGCCCTTCCATGGAGGCCTTCTTCTCCGCCGGACCCGCCGGAGTCAGCCCCGGCCCCTTGACCCTCCTCTCCACTTTCTTCCCCGACGCCGCCGTTGACTCCCCGTCTTTCTCCCAGCTCCTCGCCGGCGCTATGGCCTCTCCCATGGCTCTGCCCTTCTCCTCCGAGTTCGAATTCGGGCTCAAGCATCCCAAGCCCCCCCTCAACTTGCTCGTGGCTCGCTCTCCCTTGTTCTCCGTCCCGCCTGGCCTCAGCCCCTCTGGGTTGCTTAATTCCCCCGGCTTCTATCCTCCTCAGAGTCCATTTGGAATGTCGCACCAGCAGGCATTGGCTCAGGTCACTGCTCAAGCAGCACTGACACATTCTCATATGCATCTACCGCAAGTTGAATATCAACAATCTTTGGTATCAGGTCCTATGGAACCGTTGACACGCGATCCATCATTTACTCTCGATGAAGCATCTCAACTGTCAATAGTCCCCATCATCTCAGACACAAAAAGTCTCATTGCGGAATCGACAGAAGCCTCTCATTCTGAAAGAAAATATCAACCTCCTCCTTCTCATACCTCTGATAAACCTGCAGATGACGGATACAACTGGCGTAAATATGGACAGAAGCTGGTTAAGGGCAGTGAATATCCACGAAGCTATTACAAATGCACGCATTTGAATTGCCCTGTGAAAAAGAAGATTGAGCGCTCGCCTGATGGTCAAATTACTGAGATTATTTACAAAAGCCAGCACAACCATGACCCTCCTCCAGCCAACAAACGTGCAAGAGATAATAGTGAACCAACTGGGAGTACAAACTCTTTGTTGAAGCCTGAAAGTGAATCCCAAAATCAAGCTTTAATTTTGAACAAGACAAGCGAAAATGTGCGAATAGGGTCTAGTAACAGTGAAGAACAAGCTGATACAGGGATAACAGAAGACAGAGATGAAGATGAGCCAAATCCAAAGAGGCAGAACATTGATGCAGGGACGTCTGGTGTGCTTTTGTCACATAAAACACTCACAGAACCAAAAATCATTGTTCAAACTAGAAGTGAGGTCGACCTGTTAGATGACGGATATAGGTGGCGCAAGTACGGGCAGAAAGTGGTTAAAGGAAATCCCAATCCCAGGAGCTACTACAAATGCACTAGTACTGGATGCAATGTCCGAAAGCATGTCGAAAGATCCTCAACTGATGCGAAAGCTGTCGTAACTACATATGAAGGGAAACATAATCACGATGTTCCTGCAGCTAGAAACAGCAGCCACCACTCAGCCAACAATACTGTGCCCCAAATCAAACCTCATAAAGTTGTAGCTCAGAAACATCCATTACTTAAAGAGATGGAATTCGAAACTAATGACCAGAGACCTGCCGTTTTGCGGCTTAAAGAAGAGCAAATCACCGTGTAA 1485 48.89 MATHNKDDGSATPPLQRRPTITLPPRPSMEAFFSAGPAGVSPGPLTLLSTFFPDAAVDSPSFSQLLAGAMASPMALPFSSEFEFGLKHPKPPLNLLVARSPLFSVPPGLSPSGLLNSPGFYPPQSPFGMSHQQALAQVTAQAALTHSHMHLPQVEYQQSLVSGPMEPLTRDPSFTLDEASQLSIVPIISDTKSLIAESTEASHSERKYQPPPSHTSDKPADDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSPDGQITEIIYKSQHNHDPPPANKRARDNSEPTGSTNSLLKPESESQNQALILNKTSENVRIGSSNSEEQADTGITEDRDEDEPNPKRQNIDAGTSGVLLSHKTLTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPNPRSYYKCTSTGCNVRKHVERSSTDAKAVVTTYEGKHNHDVPAARNSSHHSANNTVPQIKPHKVVAQKHPLLKEMEFETNDQRPAVLRLKEEQITV 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1472733 1476760 - Sed0015144.1 Sed03g0237 705724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0237 494 ProSiteProfiles WRKY domain profile. 215 279 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 MobiDBLite consensus disorder prediction 287 330 - -
Sed03g0237 494 SUPERFAMILY WRKY DNA-binding domain 217 279 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 ProSiteProfiles WRKY domain profile. 375 440 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 MobiDBLite consensus disorder prediction 196 224 - -
Sed03g0237 494 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 172 460 IPR044810 GO:0003700(InterPro)
Sed03g0237 494 MobiDBLite consensus disorder prediction 271 359 - -
Sed03g0237 494 Pfam WRKY DNA -binding domain 221 277 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 Pfam WRKY DNA -binding domain 381 438 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 Gene3D WRKY domain 365 441 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 Gene3D WRKY domain 212 280 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 FunFam WRKY transcription factor 33 367 433 - -
Sed03g0237 494 MobiDBLite consensus disorder prediction 1 28 - -
Sed03g0237 494 FunFam WRKY transcription factor 209 280 - -
Sed03g0237 494 SMART WRKY_cls 380 439 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 SMART WRKY_cls 220 278 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed03g0237 494 SUPERFAMILY WRKY DNA-binding domain 372 440 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0237 Sed-Chr3:1472733 Sed11g2033 Sed-Chr11:34377014 3.00E-227 dispersed
Sed03g0237 Sed-Chr3:1472733 Sed03g0238 Sed-Chr3:1473995 2.20E-230 tandem
Sed08g0583 Sed-Chr8:3970225 Sed03g0237 Sed-Chr3:1472733 2.60E-41 transposed
Sed11g2032 Sed-Chr11:34377014 Sed03g0237 Sed-Chr3:1472733 3.00E-227 wgd
Sed03g0237 Sed-Chr3:1472733 Sed06g1497 Sed-Chr6:39672743 4.70E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37720 PF03106 WRKY 3.90E-25 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0237 - - - 0.0