Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0270 | ATGGCTTTGGCAATGGCGATTCTTGCTCTGTTCTTGATACTCTGTTTCTGCTCTGCTTTGCTTCTATGGAATCAGCTTCGTTACAGAAGAAAAGGGCTGCCTCCTGGTACAATGGGATGGCCTGTTTTTGGTGAAACCACTGAGTTTCTCAAACAAGGTCCTAACTTTATGAAATCCCAAAGAGCAAGGTATGGGAGTATTTTCAAGTCTCATATTTTGGGGTGTCCTACGATTGTTTGTATGGATCCTGAGGTTAATCGATATGTTTTGATGAATGAATCAAAAGGGATTGTCCCTGGCTACCCTCAATCCATGCTCGACATCCTCGGAAAATGTAATATCGCCGCCGTCCACGGCGGTGCTCACAAGCTATTGAGAGGTGCTCTGCTTGCTGTTGTTAGTCCTGCCATGATTAGAGATCGAATTCTTCCTAAAGTTGATGACTTTATGCGATCCCATTTGAGGAATTGGGATCAACAAATCATTGACATTCAAGAGAAGACCAAAGAGATGGCTCTTCGATCGTCTATGAAGCAGATTGCTGGAATCGAGTCCGGTCCTTTATCGCAATCGTTCGTCCCGGAGTTCTTTAACCTTGTTCTCGGCACCCTCTCGCTCCCTATCGATCTCCCCGGCACTAACTACCGCCGAGGAATCCAGGCAAGGAAGAACATAATAAAACTGTTGCAGCAGCTGATAAATGAGAGAAGAGCCTCAGGGACACAAAAAGATGACATGCTTGGATATTTCTTGAGTGATGAGAACAAATATAAGATGAATGATGAAGAGATGATTGATCAAATCATTACTGTTTTGTACTCTGGCTATGAAACTGTTTCTACAACTTCAATGATGGCTGTCAAGTTTCTCCATGATCATCCAGAAGTTCTTCAGCAACTCAGAAAAGAGCATTTGGCAATTAGGGAAAAGAAAAATCCTGAGGACCCCATTGATTGGAATGATCTTAAAGCCATGAAGTTCACACGTGCGGTGATATTTGAATCATCAAGGCTGGCCACAATTGTTAATGGGGTTTTGAGAAAAACTACAAAGGACATGGAACTAAATGGCTTTGTCATTCCCAAAGGATGGAGGATTTATGTGTACACCAGAGAGATAAACTATGACCCTTTTCTCTATTCTGAACCATTCACCTTCAACCCTTGGAGATGGCTGGATAGAAACTTGGAGTCCCATAATTACTTCTTCATCTTTGGAGGTGGAACCAGACTTTGTCCTGGCAAAGAACTGGGAATTGCAGAGATATCTACTTTTTTACATTACTTTATAACTAAATACAGATGGGAAGAAGTTGGAGGAGATAAGTTGTTGAAATTTCCAAGAGTGCATGCTCCAAGTGGGCTCCACATTAGGGTTTCATCTTACTGA | 1389 | 42.26 | MALAMAILALFLILCFCSALLLWNQLRYRRKGLPPGTMGWPVFGETTEFLKQGPNFMKSQRARYGSIFKSHILGCPTIVCMDPEVNRYVLMNESKGIVPGYPQSMLDILGKCNIAAVHGGAHKLLRGALLAVVSPAMIRDRILPKVDDFMRSHLRNWDQQIIDIQEKTKEMALRSSMKQIAGIESGPLSQSFVPEFFNLVLGTLSLPIDLPGTNYRRGIQARKNIIKLLQQLINERRASGTQKDDMLGYFLSDENKYKMNDEEMIDQIITVLYSGYETVSTTSMMAVKFLHDHPEVLQQLRKEHLAIREKKNPEDPIDWNDLKAMKFTRAVIFESSRLATIVNGVLRKTTKDMELNGFVIPKGWRIYVYTREINYDPFLYSEPFTFNPWRWLDRNLESHNYFFIFGGGTRLCPGKELGIAEISTFLHYFITKYRWEEVGGDKLLKFPRVHAPSGLHIRVSSY | 462 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1648533 | 1651953 | + | Sed0013203.3 | Sed03g0270 | 705757 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0270 | 462 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 405 | 414 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Sed03g0270 | 462 | PRINTS | E-class P450 group I signature | 412 | 435 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | E-class P450 group I signature | 61 | 80 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | E-class P450 group I signature | 402 | 412 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | E-class P450 group I signature | 329 | 347 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | E-class P450 group I signature | 369 | 393 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | P450 superfamily signature | 330 | 341 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | P450 superfamily signature | 274 | 291 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | P450 superfamily signature | 403 | 412 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | PRINTS | P450 superfamily signature | 412 | 423 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | Gene3D | Cytochrome P450 | 24 | 460 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | FunFam | Cytochrome P450 85A1 | 24 | 461 | - | - | |
| Sed03g0270 | 462 | SUPERFAMILY | Cytochrome P450 | 26 | 458 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | Pfam | Cytochrome P450 | 34 | 443 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Sed03g0270 | 462 | CDD | CYP90-like | 60 | 460 | - | - | |
| Sed03g0270 | 462 | PANTHER | CYTOCHROME P450 26 | 33 | 433 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0268 | Sed-Chr3:1648533 | Sed03g0270 | Sed-Chr3:1648533 | 5.30E-205 | dispersed | |
| Sed03g0270 | Sed-Chr3:1648533 | Sed11g2056 | Sed-Chr11:34570422 | 9.30E-255 | dispersed | |
| Sed03g0269 | Sed-Chr3:1648533 | Sed03g0270 | Sed-Chr3:1648533 | 8.50E-201 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0270 | K09590 | - | csv:101206858 | 843.573 |