Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0270 ATGGCTTTGGCAATGGCGATTCTTGCTCTGTTCTTGATACTCTGTTTCTGCTCTGCTTTGCTTCTATGGAATCAGCTTCGTTACAGAAGAAAAGGGCTGCCTCCTGGTACAATGGGATGGCCTGTTTTTGGTGAAACCACTGAGTTTCTCAAACAAGGTCCTAACTTTATGAAATCCCAAAGAGCAAGGTATGGGAGTATTTTCAAGTCTCATATTTTGGGGTGTCCTACGATTGTTTGTATGGATCCTGAGGTTAATCGATATGTTTTGATGAATGAATCAAAAGGGATTGTCCCTGGCTACCCTCAATCCATGCTCGACATCCTCGGAAAATGTAATATCGCCGCCGTCCACGGCGGTGCTCACAAGCTATTGAGAGGTGCTCTGCTTGCTGTTGTTAGTCCTGCCATGATTAGAGATCGAATTCTTCCTAAAGTTGATGACTTTATGCGATCCCATTTGAGGAATTGGGATCAACAAATCATTGACATTCAAGAGAAGACCAAAGAGATGGCTCTTCGATCGTCTATGAAGCAGATTGCTGGAATCGAGTCCGGTCCTTTATCGCAATCGTTCGTCCCGGAGTTCTTTAACCTTGTTCTCGGCACCCTCTCGCTCCCTATCGATCTCCCCGGCACTAACTACCGCCGAGGAATCCAGGCAAGGAAGAACATAATAAAACTGTTGCAGCAGCTGATAAATGAGAGAAGAGCCTCAGGGACACAAAAAGATGACATGCTTGGATATTTCTTGAGTGATGAGAACAAATATAAGATGAATGATGAAGAGATGATTGATCAAATCATTACTGTTTTGTACTCTGGCTATGAAACTGTTTCTACAACTTCAATGATGGCTGTCAAGTTTCTCCATGATCATCCAGAAGTTCTTCAGCAACTCAGAAAAGAGCATTTGGCAATTAGGGAAAAGAAAAATCCTGAGGACCCCATTGATTGGAATGATCTTAAAGCCATGAAGTTCACACGTGCGGTGATATTTGAATCATCAAGGCTGGCCACAATTGTTAATGGGGTTTTGAGAAAAACTACAAAGGACATGGAACTAAATGGCTTTGTCATTCCCAAAGGATGGAGGATTTATGTGTACACCAGAGAGATAAACTATGACCCTTTTCTCTATTCTGAACCATTCACCTTCAACCCTTGGAGATGGCTGGATAGAAACTTGGAGTCCCATAATTACTTCTTCATCTTTGGAGGTGGAACCAGACTTTGTCCTGGCAAAGAACTGGGAATTGCAGAGATATCTACTTTTTTACATTACTTTATAACTAAATACAGATGGGAAGAAGTTGGAGGAGATAAGTTGTTGAAATTTCCAAGAGTGCATGCTCCAAGTGGGCTCCACATTAGGGTTTCATCTTACTGA 1389 42.26 MALAMAILALFLILCFCSALLLWNQLRYRRKGLPPGTMGWPVFGETTEFLKQGPNFMKSQRARYGSIFKSHILGCPTIVCMDPEVNRYVLMNESKGIVPGYPQSMLDILGKCNIAAVHGGAHKLLRGALLAVVSPAMIRDRILPKVDDFMRSHLRNWDQQIIDIQEKTKEMALRSSMKQIAGIESGPLSQSFVPEFFNLVLGTLSLPIDLPGTNYRRGIQARKNIIKLLQQLINERRASGTQKDDMLGYFLSDENKYKMNDEEMIDQIITVLYSGYETVSTTSMMAVKFLHDHPEVLQQLRKEHLAIREKKNPEDPIDWNDLKAMKFTRAVIFESSRLATIVNGVLRKTTKDMELNGFVIPKGWRIYVYTREINYDPFLYSEPFTFNPWRWLDRNLESHNYFFIFGGGTRLCPGKELGIAEISTFLHYFITKYRWEEVGGDKLLKFPRVHAPSGLHIRVSSY 462
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 1648533 1651953 + Sed0013203.3 Sed03g0270 705757
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0270 462 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 405 414 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
Sed03g0270 462 PRINTS E-class P450 group I signature 412 435 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS E-class P450 group I signature 402 412 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS E-class P450 group I signature 329 347 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS E-class P450 group I signature 369 393 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS P450 superfamily signature 330 341 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS P450 superfamily signature 274 291 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS P450 superfamily signature 403 412 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 PRINTS P450 superfamily signature 412 423 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 Gene3D Cytochrome P450 24 460 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 FunFam Cytochrome P450 85A1 24 461 - -
Sed03g0270 462 SUPERFAMILY Cytochrome P450 26 458 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 Pfam Cytochrome P450 34 443 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Sed03g0270 462 CDD CYP90-like 60 460 - -
Sed03g0270 462 PANTHER CYTOCHROME P450 26 33 433 - GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0268 Sed-Chr3:1648533 Sed03g0270 Sed-Chr3:1648533 5.30E-205 dispersed
Sed03g0270 Sed-Chr3:1648533 Sed11g2056 Sed-Chr11:34570422 9.30E-255 dispersed
Sed03g0269 Sed-Chr3:1648533 Sed03g0270 Sed-Chr3:1648533 8.50E-201 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0270 K09590 - csv:101206858 843.573