Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0276 ATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCATACACATCGGTTTTTCGAAGAGGGGAAGTGCATCCTATCTCTTCATCAATTCAAGGGGCAACGTCTATGAATTCTGCAGCATCAATAGATAATTCTTTATCTGAAATATACCGCTCACCCCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATTCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGACGAAACAACTTGA 687 42.94 MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGATSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT 228
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
3 1669336 1673717 - Sed0020163.1 Sed03g0276 705763
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0276 228 MobiDBLite consensus disorder prediction 103 130 - -
Sed03g0276 228 CDD RING-H2_AIRP1-like 174 222 - -
Sed03g0276 228 MobiDBLite consensus disorder prediction 103 136 - -
Sed03g0276 228 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 224 - GO:0004842(PANTHER)
Sed03g0276 228 Pfam Ring finger domain 177 218 IPR001841 -
Sed03g0276 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 226 IPR013083 -
Sed03g0276 228 SUPERFAMILY RING/U-box 171 224 - -
Sed03g0276 228 SMART ring_2 178 218 IPR001841 -
Sed03g0276 228 ProSiteProfiles Zinc finger RING-type profile. 178 218 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0276 Sed-Chr3:1669336 Sed05g0765 Sed-Chr5:6021755 4.00E-17 dispersed
Sed03g0276 Sed-Chr3:1669336 Sed03g0277 Sed-Chr3:1669336 1.40E-94 tandem
Sed04g1872 Sed-Chr4:33443504 Sed03g0276 Sed-Chr3:1669336 1.40E-08 transposed
Sed11g2063 Sed-Chr11:34613965 Sed03g0276 Sed-Chr3:1669336 2.90E-109 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0276 - - - 0.0