Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0276 | ATGGGTGCTGTTTGCTGCTGTTTGAGTATGGAAGATTTTGAAGACTATGTCAATCCTAATAGTTCAGCATATAGGAATTGCGCCTGTCTTAGCTGCTTCATTCAAAATTTCTTAAATGCATACACATCGGTTTTTCGAAGAGGGGAAGTGCATCCTATCTCTTCATCAATTCAAGGGGCAACGTCTATGAATTCTGCAGCATCAATAGATAATTCTTTATCTGAAATATACCGCTCACCCCCAAGGCCATTGCCATATGATGCTGACCCCAGATACATTCGCTTGCAGCGGGATGGATTGATTTCTAGGCGAGAGAAGGGGTCAAGCCATTTACATGAGGAGTCAGAACCTCTCAGAAGTGAAGTAGATACAGATTCAGATTCTTTGGACTCGGCAGGCAAATGGAAGGGATCTTCTTGTCTTGAGGAATCTAAAGAAAATCTTGGCAAGTCATCTCTGAAGTTCCCAACAACTAAACCTCCCACCGGAACTTGGTATTCTTGTACATCCTCAGAAGAAGACGAGGATGTCTGCCCGACGTGTCTTGAAGAGTATACTTCAGAGAATCCCAAGATAGTGACAAAATGCTCTCATCACTTTCACCTTGGATGTATCTATGAGTGGATGGAGAGAAGTGATAACTGTCCAGTTTGTGGCAAGGTAATGGCATTCGACGAAACAACTTGA | 687 | 42.94 | MGAVCCCLSMEDFEDYVNPNSSAYRNCACLSCFIQNFLNAYTSVFRRGEVHPISSSIQGATSMNSAASIDNSLSEIYRSPPRPLPYDADPRYIRLQRDGLISRREKGSSHLHEESEPLRSEVDTDSDSLDSAGKWKGSSCLEESKENLGKSSLKFPTTKPPTGTWYSCTSSEEDEDVCPTCLEEYTSENPKIVTKCSHHFHLGCIYEWMERSDNCPVCGKVMAFDETT | 228 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 1669336 | 1673717 | - | Sed0020163.1 | Sed03g0276 | 705763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0276 | 228 | MobiDBLite | consensus disorder prediction | 103 | 130 | - | - | |
| Sed03g0276 | 228 | CDD | RING-H2_AIRP1-like | 174 | 222 | - | - | |
| Sed03g0276 | 228 | MobiDBLite | consensus disorder prediction | 103 | 136 | - | - | |
| Sed03g0276 | 228 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 224 | - | GO:0004842(PANTHER) | |
| Sed03g0276 | 228 | Pfam | Ring finger domain | 177 | 218 | IPR001841 | - | |
| Sed03g0276 | 228 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 158 | 226 | IPR013083 | - | |
| Sed03g0276 | 228 | SUPERFAMILY | RING/U-box | 171 | 224 | - | - | |
| Sed03g0276 | 228 | SMART | ring_2 | 178 | 218 | IPR001841 | - | |
| Sed03g0276 | 228 | ProSiteProfiles | Zinc finger RING-type profile. | 178 | 218 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0276 | Sed-Chr3:1669336 | Sed05g0765 | Sed-Chr5:6021755 | 4.00E-17 | dispersed | |
| Sed03g0276 | Sed-Chr3:1669336 | Sed03g0277 | Sed-Chr3:1669336 | 1.40E-94 | tandem | |
| Sed04g1872 | Sed-Chr4:33443504 | Sed03g0276 | Sed-Chr3:1669336 | 1.40E-08 | transposed | |
| Sed11g2063 | Sed-Chr11:34613965 | Sed03g0276 | Sed-Chr3:1669336 | 2.90E-109 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0276 | - | - | - | 0.0 |