Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0302 ATGGACATTGGCTCCACCAAGTTGCCCCCACATTTGAAAAATCCACCCCCACTATTGTCACCATTAGAGATATTTCTGGGTGGATTTGAGGGATTTCATTTTCGACCTTCAAAGACTTGGTCGCTGGTGGGAGATTTCGTCGCTTTTGCGAGAGGTACGGCTCTTTTTGAGATGGGGGTTTTTTGGTTTGTGAATTGGATTATGGCTTCTTCACCTTCACCAAGTATTTTTCCTCCTGAAAATCCATCAAATTCCACATTTTCTTCACCTCCTTCTGAGTCTGCTATATCACCTTCATCTTCTGGACCTAATCAGACTGGTGAACCTCCTTCATCATCTTCTACTCCTTTAACCCCACCTCCACCAGTAGATGATCCTCCCTTAACATCAACCCCTCCACCATTACCTTCAACTTCAACCTCTCCTCCACCTCCTTTAATAACATCACCACCTTCTCCAGACCAATCCACTCCCCCTCCTCCCCTTGAAACTCCACCTCCACCTCCTGATTTATCGACGCCGCCGCCACCTGTAGCGGACGATTCTCCACCTCCCCAATCTAGTCCTACACCTCCATCTTCAACTCCCTCTCCTCCTCCTCCTCCTCCTGAAGCTCCACCTCTGCCGCGTGATTTATCACCGCCACCGCCACCGCCGCATCCAGCATTAGACAGTTCTCCACCTCCTCAGTCTAATCCTAGGCCTCCATCTTCAACTCCCTCTCCTCCTCCCCCTGACATTGTTCCACCTTCCCCACCTCCACCAGCTAAGGTCCCAACACCACCTTCACCAACAGAAGAAACACCTAAAGTATCTCCTCCATCACCCAAGGTTTCCCCTCCTCCTCCTACTGATTCTCAATCTCCACCAGATGAAGCCCTTCCACCAAAACCCACAGTACCTTCACCTCCTCCTTCAGCCCCTTCCTCACCTGCTCCTCCTTCAGTAACTGGTCCTGGTTCTCCATCTAACTCATCTGGTGGAAATCCTATTATGCCTCCAACTTCTGCTACACCAGAGCGACCAACTCGATCGATGAATGGTACTGATGTCGCAACAGATAAAGGAGGCCTCGACACGGGAACATCTGTGGCAGTTGGCAGCGTGGTTGGTGTTCTTGTGTTGGGTCTTTTTTTCATGACTATGTGGTTTGTTCGGAAACAGAAGAGAAGAAAGAAGAATAACCCTTACACCATGCCTTCTCCTTTTAACTCCCAAAACTCAGATTCATTTTTCCTTAGGTCCCATTCGTCAGCTCCTGTGGTAGGAAGTCGTACTGATAGTGATTTCAAGTATTCATCATCAGAAGGAGGAGTAGGTAATTCTAGACCATTTGCTTATGAAGAGCTACATCAGGCAACAAGTGGGTTTTCGCAGAATAATCTTTTAGGGGAAGGTGGGTTTGGTTGTGTATACAAAGGCACTCTTGCAGATGGAAGAGTTGTAGCCGTTAAACAACTTAAAGTTGGTGGTGGACAGGGAGAACGAGAGTTCAGAGCCGAGGTTGAGATTATTAGCCGAGTACACCATCGACACTTGGTTTCCTTGGTCGGTTACTGTATCTCCAATTATCAAAGATTGCTCGTCTATGATTATGTTCCAAACAATACCCTTCATTACCATCTGCACGCTGCTAACAGGCCAGTTTTGGCTTGGGCTACACGTGTTCGTATCGCTGCTGGTGCAGCCCGTGGAATTGCTTACCTACACGAAGATTGCCATCCACGCATTATTCACAGGGATATTAAATCGTCCAACATTCTGATTGATATCAACTTTGAAGCTCAGGTTGCAGATTTTGGACTTGCTAAATTGGCATTGGATACGCATACACATGTAACGACTCGTGTAATGGGAACCTTTGGATACATGGCTCCAGAATATGCAACAAGTGGGAAATTGACGGATAAATCTGACGTTTTCTCTTTTGGGGTTGTACTTTTGGAGTTGATTACTGGTCGAAAGTCTGTAGATTCTTCTCAGCCTCTAGGGGATGAGAGCTTAGTTGAATGGGCTCGACCATTGCTTGCACAAGCCGTCGAAGACGAGAATTTTGAAGAACTGGTGGATCCTAGGGTAGACAAAAATTACGCTGACAAAGAGATGTTTCGGATGATTGAAGCAGCCGCCGCTTGTGTTCGTCATTCAGCAATAAAGAGACCGAAAATGAGTCAGGTGGTGAGAGCTCTAGACTCCTTAGATGAAATGTCAGATCTTGCAAATGGGGTGAAACCTGGGCAAAGTGGAGTGTTTGATTCAGCTGAACAATCTGCTCAGATTAGATTGTTTCAAAGAATGGCTTTTGGAAGTCAGGATTACAGTTATGGTTATTCCAATCGAGATCGAAGTCGAAGTTATAGTCAAAGTCAGAGTAGCCGGAGTAGAGAATCCAGAGATCATAGTCCCTCGGCGCCTATTAATCGATCCCGCCCATCAAACAGCTGA 2445 46.75 MDIGSTKLPPHLKNPPPLLSPLEIFLGGFEGFHFRPSKTWSLVGDFVAFARGTALFEMGVFWFVNWIMASSPSPSIFPPENPSNSTFSSPPSESAISPSSSGPNQTGEPPSSSSTPLTPPPPVDDPPLTSTPPPLPSTSTSPPPPLITSPPSPDQSTPPPPLETPPPPPDLSTPPPPVADDSPPPQSSPTPPSSTPSPPPPPPEAPPLPRDLSPPPPPPHPALDSSPPPQSNPRPPSSTPSPPPPDIVPPSPPPPAKVPTPPSPTEETPKVSPPSPKVSPPPPTDSQSPPDEALPPKPTVPSPPPSAPSSPAPPSVTGPGSPSNSSGGNPIMPPTSATPERPTRSMNGTDVATDKGGLDTGTSVAVGSVVGVLVLGLFFMTMWFVRKQKRRKKNNPYTMPSPFNSQNSDSFFLRSHSSAPVVGSRTDSDFKYSSSEGGVGNSRPFAYEELHQATSGFSQNNLLGEGGFGCVYKGTLADGRVVAVKQLKVGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISNYQRLLVYDYVPNNTLHYHLHAANRPVLAWATRVRIAAGAARGIAYLHEDCHPRIIHRDIKSSNILIDINFEAQVADFGLAKLALDTHTHVTTRVMGTFGYMAPEYATSGKLTDKSDVFSFGVVLLELITGRKSVDSSQPLGDESLVEWARPLLAQAVEDENFEELVDPRVDKNYADKEMFRMIEAAAACVRHSAIKRPKMSQVVRALDSLDEMSDLANGVKPGQSGVFDSAEQSAQIRLFQRMAFGSQDYSYGYSNRDRSRSYSQSQSSRSRESRDHSPSAPINRSRPSNS 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1832095 1838918 + Sed0019022.1 Sed03g0302 705789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0302 814 MobiDBLite consensus disorder prediction 774 814 - -
Sed03g0302 814 MobiDBLite consensus disorder prediction 79 362 - -
Sed03g0302 814 SUPERFAMILY Protein kinase-like (PK-like) 431 730 IPR011009 -
Sed03g0302 814 SMART serkin_6 457 733 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0302 814 MobiDBLite consensus disorder prediction 774 792 - -
Sed03g0302 814 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 339 766 IPR047117 -
Sed03g0302 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 577 589 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0302 814 MobiDBLite consensus disorder prediction 319 350 - -
Sed03g0302 814 MobiDBLite consensus disorder prediction 113 318 - -
Sed03g0302 814 ProSitePatterns Protein kinases ATP-binding region signature. 463 485 IPR017441 GO:0005524(InterPro)
Sed03g0302 814 Gene3D Phosphorylase Kinase; domain 1 429 532 - -
Sed03g0302 814 CDD STKc_IRAK 463 733 - -
Sed03g0302 814 FunFam proline-rich receptor-like protein kinase PERK8 533 745 - -
Sed03g0302 814 ProSiteProfiles Protein kinase domain profile. 457 718 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0302 814 MobiDBLite consensus disorder prediction 79 112 - -
Sed03g0302 814 Gene3D Transferase(Phosphotransferase) domain 1 533 745 - -
Sed03g0302 814 Pfam Protein tyrosine and serine/threonine kinase 460 730 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0302 814 FunFam Proline-rich receptor-like protein kinase PERK8 430 532 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0302 Sed-Chr3:1832095 Sed11g2082 Sed-Chr11:34752321 4.10E-221 dispersed
Sed05g2837 Sed-Chr5:39521294 Sed03g0302 Sed-Chr3:1832095 2.80E-64 dispersed
Sed05g2838 Sed-Chr5:39521294 Sed03g0302 Sed-Chr3:1832095 2.80E-64 dispersed
Sed14g0568 Sed-Chr14:5681470 Sed03g0302 Sed-Chr3:1832095 8.60E-63 dispersed
Sed05g3411 Sed-Chr5:43164087 Sed03g0302 Sed-Chr3:1832095 4.50E-36 transposed
Sed11g2081 Sed-Chr11:34752321 Sed03g0302 Sed-Chr3:1832095 1.10E-222 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78854 PF07714 PK_Tyr_Ser-Thr 8.90E-45 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0302 - - - 0.0