Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0337 ATGAAAATGGTATTATTGGGTGGGTTTGTTTTGTTCATCTTGTTCGTTGTAGCTCCAGTGTCTGTGAGATCTCTGAACCCACCTCTGAACGACGACGTTTTGGGCCTGATTGTGTTCAAGGCCGACATTGAAGATCCTAAAGGGAAATTAGCATCGTGGAACGAAGATGACGACAGCCCCTGTAATTGGGTTGGTGTAAAATGCAACCCTAGATCCAATAGAGTCGTTGAGCTCGATCTTAATGGCTTTTCTCTCAACGGAAGACTCGGTCGTGGCCTTCTTCAGCTGCAATTTCTTCGTAAGCTTTCACTTTCCAACAACAATCTTACTGGGAATTTGAGTCCCAATAATGCCCATTTTGAAAATCTTCGAGTTGTTGATTTTAGCGGTAATGGGTTTTCTGGGATTATTCCGGATGATTTCTTCCGGCAATGTGGGTCGTTGAGAGTGATTTCTTTGGCTAAGAACAAATTTTCTGGGAAAATCCCTGAAAGTTTGAGCTCTTGTGTTAGTCTTGCTGCTCTTAATTTCTCTTCTAATCAGTTTTCGGGTTTATTGCCTTCTGGGATTTGGTCCTTGACTGGGCTTCGGTCTTTGGATTTGTCTGATAATGATTTGGAAGGCGAAATTACAGAGGGGTTTAAGGGTATGAATAATTTGAGGGGTGTTAATTTGGGGAGGAATCGATTTTCTGGGCAGATCCCACATGGGATTGGGAGTTGTTTTCTCTTGAGGTTTGTTGATCTTAGTGAAAATTTATTCTCCGGCGAGGTTCCGGCGACAATGCGGAAGCTTAGTTTATGCAGTACTCTTAATTTAAGGAGGAATTTGTTTGATGGGAAGGTTCCTGAATGGATTGGTGAGATGGAAGGCCTTGAAGCTTTGGATCTTTCAGGGAATAGATTTTCTGGTAAGGTTCCTAGTTCATTTGGGAATCTTCAGAATCTGAAGGTTTTGAATCTTTCTGGAAATGGTTTAATTGGTAGCTTGGCAGAGTCCATAGTTCCTTCTCAAAACCTTTCAGCCATGGATCTTGGCCATGGTTCTCTAACTGGTGTTCTTCCTGCTTGGATTCTGAAGCTAGGTTCTCAGAATGTATTGCCTTCTGATGTCAAGAGAAGCTCTATTTCAACTACAGTGGGAAAAAGATTGGTTAATCTTGAAGTTCTTGATTTGTCTCACAATGCATTTTCAGGTGAAATTTCACCTGAGATTAGTGTGTTAAGTAACTTGCAGGTGTTGAACCTGTGCAAGAACTCATTTGTTGGGGCTATTCCAGAGAGTGTTGGTGGTTTGAAGGCATTGGTTTTTCTTGACTTTAGTGAGAACCAGTTGAATGGAAGCATTCCCGAAGCGATCGGCAGCGACATATCGTTGAAGGAATTGAGATTGGAGAAGAACTTGCTTGAGGGCGAGGTTCCAAATTCAATAGGCAACTGTTCTTCACTTGTAACTCTGGACATATCAGAAAACAGATTAAGTGGCTCCATACCAGCAACATTGTCTCATCTGACTAATCTTCAAATTGTGGATTTGTCAACAAACAATCTCAGTGGTGCATTGCCTAAACAGTTGGCCAATCTTCCCAACCTTATTTTGTTCAACATTTCTCACAACAATCTTCTAGGTGAACTGCCTGCTGGTGGCTTTTTCAATACAATCTCCCCTTCCTCTGTGGCTGGAAATCCTTCACTTTGTGGTTCTATTGTAAATAAGTCTTGTCCTGGTGTCCTTCCTAAACCTATTGTTCTCAATCCCAACTCATCCTCTGACCCTGGTTCTCCTTCATTACCTTCAACACTTGGTCATAAAAAAATCATCCTCAGCATCTCTGCACTCATTGCCATTGGTGCAGCGGCTGTTATCCTCGTCGGTGTAGTTGCGATCACCGTCCTTAACCTCCGTGTTCGGTCATCTGCCAATCATCCTGAAGCTGCCATTGCTTTTTCTGGAGGGGATGACTTCAGCAACTCACCAACTACAGATGCCAATTCTGGCAAGCTGGTCATGTTCTCGGGAGAGCCCGACTTCAGTACTGGTGCACATGCCCTCCTTAACAAGGATTGTGAGCTTGGGCGGGGTGGATTTGGAGCGGTTTACCAGACTGTTCTTCGTGATGGGCATTCGGTTGCCATTAAAAAGCTCACTGTTTCAAGTCTTGTCAAATCTCAAGATGAGTTTGAAAGGGAGGTTAAGAAGTTGGGGAAGATTAGGCACCAAAATCTTGTTGCTCTAGAAGGTTATTACTGGACTCCATCTCTGCAGCTCCTCATATATGAATTTGTTTCTGGAGGGAGTTTGTATAAACAGCTTCATGAAGGATTGGGGGGAAACATCCTCTCATGGAATGAGAGGTTCAACATAATCCTCGGAACGGCGAAAAGCTTGGCACATTTGCATCAAATGAACATCATTCACTACAACATAAAATCAAGCAATGTCCTGATTGACAGTTCAGGTGAACCTAAAGTTGGAGATTTTGGCCTAGCAAGATTGTTACCAATGCTCGACCGATACGTGTTGAGCAGCAAGATACAGAGTGCGCTCGGCTATATGGCACCCGAGTTTGCCTGCAAAACAGTTAAGATAACAGAGAAATGTGATGTGTATGGATTTGGAGTTCTAGTTCTCGAGGTGGTAACTGGGAAGAGACCTGTAGAGTACATGGAAGACGATGTTGTGGTACTCTCCGACATGGTTCGACGAGCGCTAGAAGAAGGTCGGGTGGAGGAATGCATTGACGAGAGGCTTAAGAGGAAGTTCCCATCCGAGGAGGCCATACCAGTAGTGAAACTAGGCTTGATATGCACCTCTCAGGTGCCATCAAACCGACCCGATATGGCAGAGGTTGTTAATATATTAGAACTTATCAGATGTCCATCAGAAGGCCAAGAAGAACTGGGATAA 2907 43.62 MKMVLLGGFVLFILFVVAPVSVRSLNPPLNDDVLGLIVFKADIEDPKGKLASWNEDDDSPCNWVGVKCNPRSNRVVELDLNGFSLNGRLGRGLLQLQFLRKLSLSNNNLTGNLSPNNAHFENLRVVDFSGNGFSGIIPDDFFRQCGSLRVISLAKNKFSGKIPESLSSCVSLAALNFSSNQFSGLLPSGIWSLTGLRSLDLSDNDLEGEITEGFKGMNNLRGVNLGRNRFSGQIPHGIGSCFLLRFVDLSENLFSGEVPATMRKLSLCSTLNLRRNLFDGKVPEWIGEMEGLEALDLSGNRFSGKVPSSFGNLQNLKVLNLSGNGLIGSLAESIVPSQNLSAMDLGHGSLTGVLPAWILKLGSQNVLPSDVKRSSISTTVGKRLVNLEVLDLSHNAFSGEISPEISVLSNLQVLNLCKNSFVGAIPESVGGLKALVFLDFSENQLNGSIPEAIGSDISLKELRLEKNLLEGEVPNSIGNCSSLVTLDISENRLSGSIPATLSHLTNLQIVDLSTNNLSGALPKQLANLPNLILFNISHNNLLGELPAGGFFNTISPSSVAGNPSLCGSIVNKSCPGVLPKPIVLNPNSSSDPGSPSLPSTLGHKKIILSISALIAIGAAAVILVGVVAITVLNLRVRSSANHPEAAIAFSGGDDFSNSPTTDANSGKLVMFSGEPDFSTGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQDEFEREVKKLGKIRHQNLVALEGYYWTPSLQLLIYEFVSGGSLYKQLHEGLGGNILSWNERFNIILGTAKSLAHLHQMNIIHYNIKSSNVLIDSSGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLSDMVRRALEEGRVEECIDERLKRKFPSEEAIPVVKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGQEELG 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2012507 2016305 + Sed0014626.1 Sed03g0337 705824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0337 968 CDD STKc_IRAK 691 957 - -
Sed03g0337 968 Gene3D Transferase(Phosphotransferase) domain 1 762 966 - -
Sed03g0337 968 Gene3D Ribonuclease Inhibitor 187 285 IPR032675 -
Sed03g0337 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 309 578 - -
Sed03g0337 968 SMART LRR_typ_2 193 216 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 432 456 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 384 408 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 217 241 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 120 144 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 504 527 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 528 552 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 313 337 IPR003591 -
Sed03g0337 968 SMART LRR_typ_2 289 312 IPR003591 -
Sed03g0337 968 SUPERFAMILY L domain-like 265 558 - -
Sed03g0337 968 Pfam Leucine rich repeat 270 326 IPR001611 GO:0005515(InterPro)
Sed03g0337 968 Pfam Leucine rich repeat 147 206 IPR001611 GO:0005515(InterPro)
Sed03g0337 968 Pfam Leucine rich repeat 386 445 IPR001611 GO:0005515(InterPro)
Sed03g0337 968 Pfam Leucine rich repeat 458 517 IPR001611 GO:0005515(InterPro)
Sed03g0337 968 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524(InterPro)
Sed03g0337 968 Gene3D Ribonuclease Inhibitor 30 186 IPR032675 -
Sed03g0337 968 PRINTS Leucine-rich repeat signature 483 496 - -
Sed03g0337 968 PRINTS Leucine-rich repeat signature 504 517 - -
Sed03g0337 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 30 308 - -
Sed03g0337 968 Pfam Protein tyrosine and serine/threonine kinase 687 953 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0337 968 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0337 968 Pfam Leucine rich repeat N-terminal domain 29 69 IPR013210 -
Sed03g0337 968 Pfam Leucine Rich Repeat 219 241 IPR001611 GO:0005515(InterPro)
Sed03g0337 968 Pfam Leucine Rich Repeat 122 141 IPR001611 GO:0005515(InterPro)
Sed03g0337 968 Pfam Leucine Rich Repeat 99 115 IPR001611 GO:0005515(InterPro)
Sed03g0337 968 Gene3D Ribonuclease Inhibitor 289 577 IPR032675 -
Sed03g0337 968 Gene3D Phosphorylase Kinase; domain 1 678 761 - -
Sed03g0337 968 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 384 959 IPR050647 -
Sed03g0337 968 SMART LRR_sd22_2 432 459 - -
Sed03g0337 968 SMART LRR_sd22_2 384 413 - -
Sed03g0337 968 SMART LRR_sd22_2 313 332 - -
Sed03g0337 968 SMART LRR_sd22_2 96 125 - -
Sed03g0337 968 SMART LRR_sd22_2 504 530 - -
Sed03g0337 968 SMART LRR_sd22_2 193 216 - -
Sed03g0337 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 762 963 - -
Sed03g0337 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 761 - -
Sed03g0337 968 SUPERFAMILY L domain-like 47 362 - -
Sed03g0337 968 SUPERFAMILY Protein kinase-like (PK-like) 688 958 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0337 Sed-Chr3:2012507 Sed04g1099 Sed-Chr4:20423064 2.60E-174 dispersed
Sed02g1025 Sed-Chr2:47616987 Sed03g0337 Sed-Chr3:2012507 6.20E-25 transposed
Sed04g0737 Sed-Chr4:5951007 Sed03g0337 Sed-Chr3:2012507 8.10E-82 transposed
Sed03g0337 Sed-Chr3:2012507 Sed04g2966 Sed-Chr4:41078371 1.80E-191 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78855 PF00069 Pkinase 8.20E-42 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0337 - - - 0.0