Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0339 ATGGCTACCTTACAAATCTCTCTTCTTTCACTTTCCCTCCTACTTTTCCTCCCTACCATCTTTGCCGACTATGGCGGACCACAGTCGGGCCACGCCACGTTCTATGGCGGAGGCGACGCCTCGGGAACAATGGGTGGGGCTTGTGGGTATGGGAATTTGTACAGCCAAGGTTACGGGACGAACACGGCGGCGCTGAGTACGGCGTTGTTCAACAATGGGCTAAGCTGTGGCTCTTGCTATGAAATTAGCTGTACTAGTGATCCCAAATGGTGTCTTCCAGGGAAGATTATTGTCACTGCTACTAATTTCTGCCCGCCTAACTTTGCATTGTCTAACGACAATGGCGGTTGGTGCAACCCTCCCCTACAACACTTCGACTTGGCCGAGCCGGCTTTTCTTCAAATCGCTCAGTACCGCGCTGGTATCGTTCCAGTCTCCTTTCGAAGAGTACCATGCGTGAAGAAGGGAGGAATAAGGTTCACGATCAACGGCCATTCATATTTCAACTTGGTACTAATCACCAACGTCGGCGGCGCCGGCGACATCCATTCGGTATCGATTAAAGGATCCAAAACCGGGTGGCAAGCAATGTCGAGGAATTGGGGTCAAAACTGGCAGAGCAACAATTACATGAACGGACAGAGCCTTTCCTTCCAAGTCACCACCAGCGACGCCCGCACCGTCACTAGCTACGACGCCGCTCCGGCCGGCTGGCAGTTCGGCCAGACCTTCGAGGGCAGCCAGTTCTAA 750 53.2 MATLQISLLSLSLLLFLPTIFADYGGPQSGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEISCTSDPKWCLPGKIIVTATNFCPPNFALSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDIHSVSIKGSKTGWQAMSRNWGQNWQSNNYMNGQSLSFQVTTSDARTVTSYDAAPAGWQFGQTFEGSQF 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2053217 2055191 + Sed0017942.1 Sed03g0339 705826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0339 249 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 246 IPR007117 -
Sed03g0339 249 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 157 IPR007112 -
Sed03g0339 249 SUPERFAMILY PHL pollen allergen 154 246 IPR036749 -
Sed03g0339 249 Gene3D - 156 249 IPR036749 -
Sed03g0339 249 FunFam Expansin 18 153 - -
Sed03g0339 249 SUPERFAMILY Barwin-like endoglucanases 16 175 IPR036908 -
Sed03g0339 249 FunFam Expansin 157 249 - -
Sed03g0339 249 PANTHER EXPANSIN-A15 14 249 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 132 145 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 203 224 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 168 189 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 57 71 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 84 95 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 156 168 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 232 248 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 96 106 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 PRINTS Expansin signature 115 132 IPR002963 GO:0009664(InterPro)
Sed03g0339 249 SMART dpbb_1 62 147 IPR007112 -
Sed03g0339 249 Gene3D - 19 152 IPR036908 -
Sed03g0339 249 CDD DPBB_EXPA_N 26 152 - -
Sed03g0339 249 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576(InterPro)
Sed03g0339 249 PRINTS Expansin/Lol pI family signature 194 208 IPR007118 GO:0005576(InterPro)
Sed03g0339 249 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576(InterPro)
Sed03g0339 249 PRINTS Expansin/Lol pI family signature 140 156 IPR007118 GO:0005576(InterPro)
Sed03g0339 249 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Sed03g0339 249 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576(InterPro)
Sed03g0339 249 Pfam Expansin C-terminal domain 158 235 IPR007117 -
Sed03g0339 249 Pfam Lytic transglycolase 62 147 IPR009009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0339 Sed-Chr3:2053217 Sed06g1515 Sed-Chr6:39836514 1.40E-111 dispersed
Sed11g2112 Sed-Chr11:35050955 Sed03g0339 Sed-Chr3:2053217 2.00E-131 wgd
Sed03g0339 Sed-Chr3:2053217 Sed04g2953 Sed-Chr4:41018361 4.90E-117 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0339 - - - 0.0