Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0351 ATGGCTAGAGTCTTGGCTTTGAATTTGGCTTTGTTTTTGCTCTTTTTGGGCTGTGCTTCAGCTCAGCTTTCTACTGGTTTTTACTCTTCTTCTTGTCCAAACCTGTTGTCCACTGTCAAATCCTCTGTTCGCTCTGCTGTTTCGAGCGAGGCTCGCATGGGGGCTTCGATTCTTCGCTTGTTCTTCCATGACTGTTTTGTCAATGGATGCGATGGGTCGATTTTGTTAGATGACACGTCGAGCTTCACCGGAGAGAAAAATGCAAACCCCAATAGAAACTCTGCAAGAGGTTTTGATGTCATTGATAACATCAAAACCGCTGTCGAAAAGGCTTGTCCCGGCGTTGTTTCTTGTGCTGATATTCTTGCTATTGCTGCTCGTGACTCCATTGTTTCCCTAGGAGGGCCGAGCTGGAATGTGAAGTTGGGGAGAAGAGATGCGAAAACCGCGAGCCAATCCCAAGCGAACAGCGACATCCCCGGCCCAACGTCAACCCTTACCCAACTCACCTCTAGATTCAGTGCACTTGGACTCTCCAACACGGACTTGGTCGCTCTCTCCGGCGGGCATACGATCGGGCAAGCGAGGTGCACGACATTCAGAAGCAGAATATACAGCAATGCCACAAACATTGATAGTTCATTTGCAAGCACGAGGCAAGGCAACTGCCCGAGCAGTTCCGGCTCCGGCGACAACAATTTGGCTCCTCTTGACTTGCAAACTCCAACTGGCTTTGACAACAACTACTTCAAAAACCTCATTCAAAACAAGGGCTTGCTCCAGTCCGATCAAGTTCTCTTCAATGGCGGATCTGTAGACTCCATTGTCCAAAATTACGCCAATGCGCCTGCCCGTTTCTTCTCTGATTTTGCCGCCGCCATGGTTCGGATGGGCGATATCAGCCCCCTTACTGGCTCCAATGGCGAAATTAGAAAGAACTGCAGGGTGGTTAATTAA 957 49.22 MARVLALNLALFLLFLGCASAQLSTGFYSSSCPNLLSTVKSSVRSAVSSEARMGASILRLFFHDCFVNGCDGSILLDDTSSFTGEKNANPNRNSARGFDVIDNIKTAVEKACPGVVSCADILAIAARDSIVSLGGPSWNVKLGRRDAKTASQSQANSDIPGPTSTLTQLTSRFSALGLSNTDLVALSGGHTIGQARCTTFRSRIYSNATNIDSSFASTRQGNCPSSSGSGDNNLAPLDLQTPTGFDNNYFKNLIQNKGLLQSDQVLFNGGSVDSIVQNYANAPARFFSDFAAAMVRMGDISPLTGSNGEIRKNCRVVN 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2118743 2120227 - Sed0003008.1 Sed03g0351 705838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0351 318 Pfam Peroxidase 39 281 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 CDD secretory_peroxidase 22 317 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed03g0351 318 Gene3D Peroxidase, domain 2 160 297 - -
Sed03g0351 318 PANTHER PEROXIDASE 72-RELATED 12 317 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 Gene3D - 26 318 - -
Sed03g0351 318 PRINTS Haem peroxidase superfamily signature 54 68 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Haem peroxidase superfamily signature 116 133 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Haem peroxidase superfamily signature 134 146 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Haem peroxidase superfamily signature 182 197 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 SUPERFAMILY Heme-dependent peroxidases 22 318 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Sed03g0351 318 FunFam Peroxidase 26 172 - -
Sed03g0351 318 PRINTS Plant peroxidase signature 32 51 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 115 125 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 181 193 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 56 76 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 96 109 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 PRINTS Plant peroxidase signature 134 149 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed03g0351 318 ProSitePatterns Peroxidases active site signature. 54 65 IPR019794 GO:0004601(InterPro)
Sed03g0351 318 FunFam Peroxidase 160 297 - -
Sed03g0351 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 182 192 IPR019793 -
Sed03g0351 318 ProSiteProfiles Plant heme peroxidase family profile. 22 318 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0351 Sed-Chr3:2118743 Sed05g3806 Sed-Chr5:45708736 5.00E-106 dispersed
Sed03g0351 Sed-Chr3:2118743 Sed01g0806 Sed-Chr1:5960997 7.20E-105 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0351 K00430 - csv:101218447 544.273