Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0366 | ATGACAGCAGACATAATCGAGAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGACACTTCTTGCAACGATGGAGACAAGCGAATCCGTAAAGCTCCGGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCATTGAATTCACATTGCAATTACAGAGGTGTAAGGCAGAGGACTTGGGGCAAATGGGTTGCGGAGATTCGTGAACCCAATAGAGGAAAGAGGCTGTGGCTTGGAACCTTCCCTTCCGCGATCGAAGCTGCTCTTGCCTATGACGAGGCTGCGAGGACAATGTATGGCCAGAGTGCTCGTTTGAACCTTCCCAACATTGCAAATAGTGGGCAGCTTAAAGAGATTTTTTTGGCGGATTATTTAGGTCTGCATAACTTGGATTCTTCCACTGCCCCTTCGACATCTATGGCGTCAAACCAATCTGAGGTTTGTGGCCCTGAGGAGTATACAGTGAGGTCACAACTTTTCCCTTCAAACATTAAGGCTGAAGATGGAGATGGTGAGTCGAGGAGTGGGAATCCGGTTGATCATATCGCAATGCCGATGATCTTTGATAAGGTAATAGAACATGAGGATGCGGGTGCTAAGTATCATGAGCAAAACAATGATCAAGTAGGTCTATTAGGAACTGAGTTCCATAGTTTGGATCAGGTTTTTCAAATGGATGAAATGTTGGAGACGAGAACCGGTAATGAGGCTGATCATGTGATTCCGTTGGGCAACGAGAATCAAGTGAAGCACGAAAACGTCGATGCTAAATATCATGAGCAGATAAATGATCAACCAATTGTACTAGACACCGAAATTCCTAGTTGGGATGAACTACAAAATTGGCAATTATATGATGAAGTGCTCGATATAGAAGAGCTTCTATGCCTTATGAATAGTGATTCCATTCAAGATCCAAGCTTCTTGCAGATCAATTCCAACGGTTCTAATAACATGGCGCCTTCTCAAGTTGGCTATCTTGGGTATGAGAAACCATCAAGCTTCTCGTATCAGTTCCAAAATCCCGACGTGAAGTTGCTCGGAAGCCTCCAGCACATGGAGCAAGTTCCAGCTGATGTCAACGATTATGGATTCGATTTCTTGATGCAGGGGAGGGAGGAGGATCTGAATGCTGCAGTAGATGATTGCATAAGAAACCTGGATTATGAGATGGGTGATTTTGGTTTTTGA | 1248 | 44.71 | MTADIIERKRKSRSRRDRSTVAETLAKWKAYNECDTSCNDGDKRIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFPSAIEAALAYDEAARTMYGQSARLNLPNIANSGQLKEIFLADYLGLHNLDSSTAPSTSMASNQSEVCGPEEYTVRSQLFPSNIKAEDGDGESRSGNPVDHIAMPMIFDKVIEHEDAGAKYHEQNNDQVGLLGTEFHSLDQVFQMDEMLETRTGNEADHVIPLGNENQVKHENVDAKYHEQINDQPIVLDTEIPSWDELQNWQLYDEVLDIEELLCLMNSDSIQDPSFLQINSNGSNNMAPSQVGYLGYEKPSSFSYQFQNPDVKLLGSLQHMEQVPADVNDYGFDFLMQGREEDLNAAVDDCIRNLDYEMGDFGF | 415 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2200073 | 2202232 | + | Sed0001777.1 | Sed03g0366 | 705853 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0366 | 415 | CDD | AP2 | 69 | 128 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0366 | 415 | Pfam | AP2 domain | 70 | 119 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0366 | 415 | Gene3D | AP2/ERF domain | 70 | 128 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0366 | 415 | PRINTS | Ethylene responsive element binding protein signature | 93 | 109 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0366 | 415 | PRINTS | Ethylene responsive element binding protein signature | 71 | 82 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0366 | 415 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C | 5 | 271 | - | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER) | |
Sed03g0366 | 415 | FunFam | Ethylene-responsive transcription factor 2 | 69 | 128 | - | - | |
Sed03g0366 | 415 | SUPERFAMILY | DNA-binding domain | 70 | 127 | IPR016177 | GO:0003677(InterPro) | |
Sed03g0366 | 415 | ProSiteProfiles | AP2/ERF domain profile. | 70 | 127 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Sed03g0366 | 415 | SMART | rav1_2 | 70 | 133 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0366 | Sed-Chr3:2200073 | Sed11g2141 | Sed-Chr11:35265437 | 4.00E-148 | dispersed | |
Sed11g2140 | Sed-Chr11:35265437 | Sed03g0366 | Sed-Chr3:2200073 | 3.50E-147 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
37730 | PF00847 | AP2 | 6.50E-15 | CL0081 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0366 | K09286 | - | csv:101215431 | 489.96 |