Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0366 ATGACAGCAGACATAATCGAGAGGAAGAGGAAGTCACGGAGTAGACGGGATCGATCGACCGTGGCTGAGACTCTTGCTAAGTGGAAAGCTTATAATGAATGTGACACTTCTTGCAACGATGGAGACAAGCGAATCCGTAAAGCTCCGGCAAAAGGGTCTAAGAAGGGATGTATGAAAGGCAAAGGAGGACCATTGAATTCACATTGCAATTACAGAGGTGTAAGGCAGAGGACTTGGGGCAAATGGGTTGCGGAGATTCGTGAACCCAATAGAGGAAAGAGGCTGTGGCTTGGAACCTTCCCTTCCGCGATCGAAGCTGCTCTTGCCTATGACGAGGCTGCGAGGACAATGTATGGCCAGAGTGCTCGTTTGAACCTTCCCAACATTGCAAATAGTGGGCAGCTTAAAGAGATTTTTTTGGCGGATTATTTAGGTCTGCATAACTTGGATTCTTCCACTGCCCCTTCGACATCTATGGCGTCAAACCAATCTGAGGTTTGTGGCCCTGAGGAGTATACAGTGAGGTCACAACTTTTCCCTTCAAACATTAAGGCTGAAGATGGAGATGGTGAGTCGAGGAGTGGGAATCCGGTTGATCATATCGCAATGCCGATGATCTTTGATAAGGTAATAGAACATGAGGATGCGGGTGCTAAGTATCATGAGCAAAACAATGATCAAGTAGGTCTATTAGGAACTGAGTTCCATAGTTTGGATCAGGTTTTTCAAATGGATGAAATGTTGGAGACGAGAACCGGTAATGAGGCTGATCATGTGATTCCGTTGGGCAACGAGAATCAAGTGAAGCACGAAAACGTCGATGCTAAATATCATGAGCAGATAAATGATCAACCAATTGTACTAGACACCGAAATTCCTAGTTGGGATGAACTACAAAATTGGCAATTATATGATGAAGTGCTCGATATAGAAGAGCTTCTATGCCTTATGAATAGTGATTCCATTCAAGATCCAAGCTTCTTGCAGATCAATTCCAACGGTTCTAATAACATGGCGCCTTCTCAAGTTGGCTATCTTGGGTATGAGAAACCATCAAGCTTCTCGTATCAGTTCCAAAATCCCGACGTGAAGTTGCTCGGAAGCCTCCAGCACATGGAGCAAGTTCCAGCTGATGTCAACGATTATGGATTCGATTTCTTGATGCAGGGGAGGGAGGAGGATCTGAATGCTGCAGTAGATGATTGCATAAGAAACCTGGATTATGAGATGGGTGATTTTGGTTTTTGA 1248 44.71 MTADIIERKRKSRSRRDRSTVAETLAKWKAYNECDTSCNDGDKRIRKAPAKGSKKGCMKGKGGPLNSHCNYRGVRQRTWGKWVAEIREPNRGKRLWLGTFPSAIEAALAYDEAARTMYGQSARLNLPNIANSGQLKEIFLADYLGLHNLDSSTAPSTSMASNQSEVCGPEEYTVRSQLFPSNIKAEDGDGESRSGNPVDHIAMPMIFDKVIEHEDAGAKYHEQNNDQVGLLGTEFHSLDQVFQMDEMLETRTGNEADHVIPLGNENQVKHENVDAKYHEQINDQPIVLDTEIPSWDELQNWQLYDEVLDIEELLCLMNSDSIQDPSFLQINSNGSNNMAPSQVGYLGYEKPSSFSYQFQNPDVKLLGSLQHMEQVPADVNDYGFDFLMQGREEDLNAAVDDCIRNLDYEMGDFGF 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2200073 2202232 + Sed0001777.1 Sed03g0366 705853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0366 415 CDD AP2 69 128 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0366 415 Pfam AP2 domain 70 119 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0366 415 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0366 415 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0366 415 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0366 415 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 5 271 - GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006950(PANTHER)|GO:0045893(PANTHER)
Sed03g0366 415 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Sed03g0366 415 SUPERFAMILY DNA-binding domain 70 127 IPR016177 GO:0003677(InterPro)
Sed03g0366 415 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0366 415 SMART rav1_2 70 133 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0366 Sed-Chr3:2200073 Sed11g2141 Sed-Chr11:35265437 4.00E-148 dispersed
Sed11g2140 Sed-Chr11:35265437 Sed03g0366 Sed-Chr3:2200073 3.50E-147 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37730 PF00847 AP2 6.50E-15 CL0081 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0366 K09286 - csv:101215431 489.96