Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0369 ATGAGAGGAAAGCATGAAACTAGATGTTCTTCTTCATGTGCAGCCTGCAAGTTGCTGAAAAGAAGATGCAGTCCCGGCTGCATATTTGCACCTTATTTCAGGTCTGATGAGCCAAAGAAATTTGCAAAAGTTCACAAAGTATTTGGGGCAAGTAATGTGAGCAAGATCCTAACAGAGGTGCCTGAGGAACACAGAGAGGACACTGTGAACTCATTGGCTTACGAGGCCGAGGCCCGGCTCCGAGATCCCGTCTACGGCTGCATCGGCGCCATCGCTTTGTTGCAGACCAAAATGGTTGAGCTTCAACATGATCTTGCTCTTGCCAAGGCTCGCCTTGCTCCTTATTATGCTCGTAGTTCTAATGCTTCTTCTTCTTTGAGTGTCTTGGAAAGTTGTGTTGTTAATATGTCTTATGGTGGATTTAGTTCTGATGATATCTCCCAATTTGGATATTTAGGTGACTTTAATTCCCATTTTCCTTTTCCATTTAAAGCTTGA 498 43.98 MRGKHETRCSSSCAACKLLKRRCSPGCIFAPYFRSDEPKKFAKVHKVFGASNVSKILTEVPEEHREDTVNSLAYEAEARLRDPVYGCIGAIALLQTKMVELQHDLALAKARLAPYYARSSNASSSLSVLESCVVNMSYGGFSSDDISQFGYLGDFNSHFPFPFKA 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2229388 2230060 + Sed0008688.1 Sed03g0369 705856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0369 165 Coils Coil 91 111 - -
Sed03g0369 165 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 122 - -
Sed03g0369 165 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Sed03g0369 165 Pfam Lateral organ boundaries (LOB) domain 12 109 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0369 Sed-Chr3:2229388 Sed03g2755 Sed-Chr3:43982426 6.90E-35 dispersed
Sed11g2143 Sed-Chr11:35276261 Sed03g0369 Sed-Chr3:2229388 3.20E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37731 PF03195 LOB 8.00E-39 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0369 - - - 0.0