Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0380 ATGACAAATTATTATGATATTGATGACATTCTGGCGGAGGAAGAGCTTGTCTCAGTGATGTTCCAAAAGGCAGTTAATGGAGTTGGAATTGATCCCAGTTCTGAAACAGATTCAGTTGAATCTGGATCCAAAGTAGAGGTACCCTTCTGGCTTGCAAAAGAGCTGCATCTTAGACAAGTGGCGGTTATGGGCTTACCTGCTTGTTTTAACCAAAGAACACGACTGGAAATTCAGGCTGATGCTGCATTTGTTGATTTACGATCTAGATGTCAATACTTCTATGAATTTGGATGCAAGATTGCACCGCTGGTTGGTGATAGAACAATCGGTTCTTGGCTTTTATCCACGTTCAAAAGCAGGTACAAGGAAGTTCTTACCAAGGCTCACAATGTAGTATTTGCTGCAAGTTCTAAATACTGGACACTCCTATCAAAAGAAGAAACCAAAATGTATGAGGCAGCTCAATCCTCCATGACAGCCTTTAAGAAATGGCGAATGGGTGGGCCTAGATTTCAGAAAGCATCCTTTCTTGGGAGGAAAAGGAAGTCTTCTGAGTAG 558 41.76 MTNYYDIDDILAEEELVSVMFQKAVNGVGIDPSSETDSVESGSKVEVPFWLAKELHLRQVAVMGLPACFNQRTRLEIQADAAFVDLRSRCQYFYEFGCKIAPLVGDRTIGSWLLSTFKSRYKEVLTKAHNVVFAASSKYWTLLSKEETKMYEAAQSSMTAFKKWRMGGPRFQKASFLGRKRKSSE 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2303102 2307081 - Sed0003089.2 Sed03g0380 705867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0380 185 Pfam GINS complex protein helical bundle domain 66 165 IPR021151 -
Sed03g0380 185 Pfam GINS/PriA/YqbF domain 5 55 - -
Sed03g0380 185 Gene3D - 1 167 IPR038437 -
Sed03g0380 185 PANTHER UNCHARACTERIZED 1 183 IPR010492 GO:0000811(PANTHER)|GO:1902975(PANTHER)
Sed03g0380 185 SUPERFAMILY PriA/YqbF domain 1 66 - -
Sed03g0380 185 CDD GINS_A_psf3 65 167 - -
Sed03g0380 185 SUPERFAMILY GINS helical bundle-like 65 166 IPR036224 -
Sed03g0380 185 CDD GINS_B_Psf3 4 66 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0379 Sed-Chr3:2303102 Sed03g0380 Sed-Chr3:2303102 3.90E-103 tandem
Sed03g0380 Sed-Chr3:2303102 Sed03g0381 Sed-Chr3:2303102 3.90E-103 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0380 K10734 - csv:101203869 343.969