Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0384 ATGGAGTGTGGAATAAATCCCCACTGTTTGAATTTGAAATGCTACAAATTTGAGCTGTTTGTAATGTCATTTCTTCTACTCAGCCTTCCTTTAGCCTCATCAACACTTGGAAGAAATGACACAGACAAGTTTGCATTGCTTTCTTTCAAGTCTGAGATAACCTTAGACCCATTTGGCTTGTTCATTTCTTGGAATGAATCTGTTCATTTCTGCAAATGGGTTGGTGTTAAATGCAGTCCAAAACAGAGGGTCACTGAGTTAAACCTTCCCTCTTTTAGATTTGTTGAATATGTAAGCAACTTCTCTACGAAGCTTAAAACTATCGGATTCGGGAGAAACTATATTCATGGAACCATTCCAACTGAGATTGGAAATCTCATTGGATTAAAATCATTGGGTTTGGAGAGCAACCAACTCACTGGTCCTATACCAAATTCACTTGGCAAACTAAAAGAGCTAGGTGATTTGTATTTGAATATGAACAAACTCTCAGGAACAATCCCCCACTCTTTTGGAAACTTAACTACATTAGGGAGATGTAATTTGAGGTTAAACAATTTGACAGGAGTAATTCCATCAAGTCTAGGACAAAACCAAAAATTGCTGATGTTGATACTTTCTCAAAACCTTTTGACTGGTACTATACCAAAAGAGTTATTGAGTGTATCATCTTTATCAATTGAACTGGATTTGTCAGACAATTATTTGACTGGCTCCATTCCCTTTGAAATAGGCAAGTTGGTCAACCTTGGCTATTTGCATATTTCTGGCAACATGTTAACAGGGGTTATTCCTTCTACTCTCAGTGATTGCACAAGCTTAGTAGATCTAAACTTGAGTGGGAATCTTTTGCAGGGCCCTATACCTCAGTCTTTGAGTTCTTTGAGAGGTATCGAAGAACTCGACCTCTCTCGAAACAATTTGTCAGGCCAAATCCCATCTTATTTTCAAGAGTTTGATTTTTTTAGCTACTTAAATTTATCTTTCAACAATTTGGAAGGTGAAGTTCCCATCCAAGGAGTGTTCAGAAATGCAACTGCCTTTTCCATTATTGGAAACAAGCAACTTTGTGGGGGTATACCTGAATTGAATCTATCAAGATGCAGTTTGAAAGTGAATAATCCCACAAAGCATAAACTAACTATGAAACTGAAAGTAATCATTTCAGTTGCCAGTGGATTGGTGGGAATTCTTTTGGTCTTATGTATTGTGCTTCTTTTTTGGTCAAGGAAGAAAAGGAATAAGCTAGACTCAAATCCATCACCAAGAGTTTCCTATCTTTTGTTATCTTATAATGACCTTTTCAAAGCTACCAATAACTTTTCTCCCAACAATCTAATTGGAGCTGGTGGTTATGGGTCTGTGTATAAAGGTACTCTCAGTCATGATGAAAGTGTTGTCGCGGTTAAAGTGTTCAACCTTCAACATAGAAGAGCATCAAAGAGTTTTCTGGCAGAATGTGAAGCCCTTAAAAACATTAGACATCGCAATCTCGTCCGAATTCTTTCTGCTTGCTCAGGAATTGATTTTCAAGGAAATGATTTTATGGCATTGGTCTATGATTTCATGGTTAATGGAAGCCTAGAGAATTGGCTACACCCAATTGATAATTTAAACCAAGGTCAGAGGTATTTAAATATCATGCAAAGGCTGAACATTGCCATTGATGTGGCTAATGCTCTAGATTATCTGCACAATGGTAGTCATATGCCTATAGTTCACTGTGACTTGAAGCCTAGCAATGTTCTTTTGGATATGGACTTGACTGCTCACCTTGGAGATTTTGGACTAGCAAAAATTATGGCTGAAACTTCCTCCAAAAACAGATCAACCGAAACCGAGTCCATTGGTATCAGAGGCTCCATTGGATATGCACCTCCAGAGTATGCCATGGGAAGCGAGGTTTCAATATATGGCGACGTGTACAGTTATGGCATCCTATTGTTGGAGATGTTCACTGGAAAGAGACCAACTGATGAAATATTCAAAGATGGCTTAACATTGAACAACTATGTTCTTACATCCTTACCTGACAGGGTAGAACAAATAGCAGATCCAACAATGAGTCTTCAAGAACTAAAGGGAATAGGCAAAGGTAATATTATGCCTAAGAACAGCCATGTTCTTGCGGCTTTACCCGACCAGGTTGAACAAATAGGAGATCCGACATTGAGCAACCAAGAACCAGAGGGGATGGGCAACAATAATCTTACACTTCAGGCTACTCTATCGCTCGAAGTTAAAGAGTGCTTGTTTTCCATTTTCAGCATTGGAGTTGTATGTTCTGCCCAAATGCCTAGTCAGAGAATGAATATCAAGGATGTTGTTGCCAAACTATGCCTTGCAAGAGAAAATTTGGTATAG 2364 38.49 MECGINPHCLNLKCYKFELFVMSFLLLSLPLASSTLGRNDTDKFALLSFKSEITLDPFGLFISWNESVHFCKWVGVKCSPKQRVTELNLPSFRFVEYVSNFSTKLKTIGFGRNYIHGTIPTEIGNLIGLKSLGLESNQLTGPIPNSLGKLKELGDLYLNMNKLSGTIPHSFGNLTTLGRCNLRLNNLTGVIPSSLGQNQKLLMLILSQNLLTGTIPKELLSVSSLSIELDLSDNYLTGSIPFEIGKLVNLGYLHISGNMLTGVIPSTLSDCTSLVDLNLSGNLLQGPIPQSLSSLRGIEELDLSRNNLSGQIPSYFQEFDFFSYLNLSFNNLEGEVPIQGVFRNATAFSIIGNKQLCGGIPELNLSRCSLKVNNPTKHKLTMKLKVIISVASGLVGILLVLCIVLLFWSRKKRNKLDSNPSPRVSYLLLSYNDLFKATNNFSPNNLIGAGGYGSVYKGTLSHDESVVAVKVFNLQHRRASKSFLAECEALKNIRHRNLVRILSACSGIDFQGNDFMALVYDFMVNGSLENWLHPIDNLNQGQRYLNIMQRLNIAIDVANALDYLHNGSHMPIVHCDLKPSNVLLDMDLTAHLGDFGLAKIMAETSSKNRSTETESIGIRGSIGYAPPEYAMGSEVSIYGDVYSYGILLLEMFTGKRPTDEIFKDGLTLNNYVLTSLPDRVEQIADPTMSLQELKGIGKGNIMPKNSHVLAALPDQVEQIGDPTLSNQEPEGMGNNNLTLQATLSLEVKECLFSIFSIGVVCSAQMPSQRMNIKDVVAKLCLARENLV 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2333095 2344453 - Sed0022959.1 Sed03g0384 705871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0384 787 Gene3D Transferase(Phosphotransferase) domain 1 523 786 - -
Sed03g0384 787 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 523 703 - -
Sed03g0384 787 SUPERFAMILY Protein kinase-like (PK-like) 415 779 IPR011009 -
Sed03g0384 787 PANTHER OS04G0122200 PROTEIN 96 780 IPR051809 -
Sed03g0384 787 SUPERFAMILY L domain-like 41 358 - -
Sed03g0384 787 Gene3D Phosphorylase Kinase; domain 1 428 522 - -
Sed03g0384 787 Pfam Protein kinase domain 444 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0384 787 Pfam Leucine rich repeat N-terminal domain 40 79 IPR013210 -
Sed03g0384 787 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 85 371 - -
Sed03g0384 787 Pfam Leucine Rich Repeat 156 174 IPR001611 GO:0005515(InterPro)
Sed03g0384 787 Pfam Leucine Rich Repeat 298 318 IPR001611 GO:0005515(InterPro)
Sed03g0384 787 Pfam Leucine Rich Repeat 129 150 IPR001611 GO:0005515(InterPro)
Sed03g0384 787 ProSiteProfiles Protein kinase domain profile. 441 786 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0384 787 SMART serkin_6 441 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0384 787 Gene3D Ribonuclease Inhibitor 32 97 IPR032675 -
Sed03g0384 787 Gene3D Ribonuclease Inhibitor 98 372 IPR032675 -
Sed03g0384 787 ProSitePatterns Protein kinases ATP-binding region signature. 447 470 IPR017441 GO:0005524(InterPro)
Sed03g0384 787 FunFam LRR receptor-like serine/threonine-protein kinase EFR 412 522 - -
Sed03g0384 787 Pfam Leucine rich repeat 228 284 IPR001611 GO:0005515(InterPro)
Sed03g0384 787 ProSitePatterns Serine/Threonine protein kinases active-site signature. 572 584 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0384 Sed-Chr3:2333095 Sed11g2155 Sed-Chr11:35379927 2.80E-203 dispersed
Sed11g2153 Sed-Chr11:35367549 Sed03g0384 Sed-Chr3:2333095 3.10E-234 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78858 PF00069 Pkinase 2.00E-40 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0384 - - - 0.0