Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0395 ATGGCGACGACTGAGAATACGGTTCTGCAATTTTCACAGTCTTCCATCACTTTATCTGCCAAGGTCCATCCTCTGGTTATCTTCAACATCTGCGATTGCTATGTGAGGCGTCCGGACCAGGCCGACCGAGTGATCGGTACTCTTCTCGGCTCTGTTTCTCCTGATGGAACCGTTGATATTCGCAACTCATATGCTGTTCCTCATAACGAGTTCTCCGATCAGGTTGCGCTGGATATTGATTATCATCACAATATGTTAAATTCCCACCAGAAAGTTAATCCAAAGGAAGTTATTGTTGGATGGTACTCAACTGGTATGGGAGTTACAGGTGGCAGTGCATTGATACATGAGTTTTATTCTAGAGAAGTTGCAAACCCTATTCATCTGACTGTTGATACTGGATTTAAAAATGGAGAAGGGACAATAAAAGCTTATATCTCTTTTAATTTGTCTCTGAGTGATAAACAACTAGCTGCCCAGTTTCAAGAAATTCCTCTAGATCTTCGAATGGTTGAAGCTGAGAGACTTGGATTTGATATTCTGAAGACAACTTCTGTCGATAAGCTGCCAAATGATTTGGAAGGAATGGAATCTTCAATGGAGAGATTGCTTGCCTTAATAGACGATATTTACAAATATGTTAACAACGTTGTGGAAGGGCATGTTGAGCCAGATAACACGATTGGGAGATATCTAGCCGATGCGGTAGCATCTCTTCCAAAACTGTCGCCATCCGCTTTTGATAAACTGATGAATGACAATGTGCAGGACCATTTGCTGTTGTTGTATTTGTCAAGTATCACCAGGACACAACTGAGCTTAGCCGAAAAGTTGAATACGGCTGCGCAGATTCTGTAA 858 41.84 MATTENTVLQFSQSSITLSAKVHPLVIFNICDCYVRRPDQADRVIGTLLGSVSPDGTVDIRNSYAVPHNEFSDQVALDIDYHHNMLNSHQKVNPKEVIVGWYSTGMGVTGGSALIHEFYSREVANPIHLTVDTGFKNGEGTIKAYISFNLSLSDKQLAAQFQEIPLDLRMVEAERLGFDILKTTSVDKLPNDLEGMESSMERLLALIDDIYKYVNNVVEGHVEPDNTIGRYLADAVASLPKLSPSAFDKLMNDNVQDHLLLLYLSSITRTQLSLAEKLNTAAQIL 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2387143 2390360 + Sed0009807.1 Sed03g0395 705882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0395 285 Hamap Eukaryotic translation initiation factor 3 subunit F [EIF3F]. 18 281 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed03g0395 285 Pfam Maintenance of mitochondrial structure and function 172 279 IPR024969 -
Sed03g0395 285 Gene3D Cytidine Deaminase, domain 2 7 186 - -
Sed03g0395 285 ProSiteProfiles MPN domain profile. 20 151 IPR037518 -
Sed03g0395 285 SMART pad1_6 19 150 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Sed03g0395 285 FunFam Eukaryotic translation initiation factor 3 subunit F 8 186 - -
Sed03g0395 285 CDD MPN_eIF3f 21 278 IPR027531 GO:0003743(InterPro)|GO:0005852(InterPro)|GO:0006413(InterPro)|GO:0031369(InterPro)
Sed03g0395 285 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 19 122 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Sed03g0395 285 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 13 281 - GO:0003743(PANTHER)|GO:0006413(PANTHER)|GO:0031369(PANTHER)|GO:0071541(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0395 Sed-Chr3:2387143 Sed11g2168 Sed-Chr11:35447540 3.90E-94 dispersed
Sed11g2167 Sed-Chr11:35447540 Sed03g0395 Sed-Chr3:2387143 1.80E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0395 K03249 - csv:101205957 534.258