Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0408 | ATGGAACAACACGTTTCTACCGCCGCCGCCTCGCCGGTTTCCGACGATGTGCGGCGGTGCTCCGGCCAGTCTAGGGCCGAGGTAGATCTGGAATGTGGGTTGGCTGAGATGAAGCTACATTTGGCCAAAATGGAAAGGGATTGCCGGATTTGTCATCTGAGTACGGATGCTTCTAATCAGGAATCTGGAATCCCCATGGAGTTGGGCTGTTCTTGTAAGGATGATTTGGCTGCTGCCCACAAGCACTCACCTGTGAAATCTGTGGACCGCAATGTTAATGGTACTTGTGAAACTGATTCCCCTGAGCAGCATAACGAGTTAAATGATGCAACGACAGCAACCACTGCAGCTACTGTCGTGGTGCCACCGCACTTTACAGTGGCTCGAAACTTCTGGCAGGGCCACAGGTTCCTGAATTTCTTGCTCGCCTGCATGGTTTTCGCATTTGTCATATCATGGCTATTTCACTTCAAAATACCCTCAAGATGA | 489 | 50.51 | MEQHVSTAAASPVSDDVRRCSGQSRAEVDLECGLAEMKLHLAKMERDCRICHLSTDASNQESGIPMELGCSCKDDLAAAHKHSPVKSVDRNVNGTCETDSPEQHNELNDATTATTAATVVVPPHFTVARNFWQGHRFLNFLLACMVFAFVISWLFHFKIPSR | 162 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 2457552 | 2460167 | + | Sed0009795.1 | Sed03g0408 | 705895 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0408 | 162 | SMART | ringv_2 | 47 | 100 | IPR011016 | GO:0008270(InterPro) | |
| Sed03g0408 | 162 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Sed03g0408 | 162 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 106 | IPR013083 | - | |
| Sed03g0408 | 162 | PANTHER | ZINC FINGER, RING-CH-TYPE | 24 | 82 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0408 | Sed-Chr3:2457552 | Sed04g1211 | Sed-Chr4:25097352 | 1.20E-42 | dispersed | |
| Sed11g2183 | Sed-Chr11:35549506 | Sed03g0408 | Sed-Chr3:2457552 | 2.50E-61 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0408 | - | - | - | 0.0 |