Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0419 ATGTCGGAAGTAATTGCTGTCATGGATATCGACGACGATAATGTCAACAACGAAACTGAAAAGGCAGTTAAGGGCACAAATGTCGCCGCCGCACCCGACGGCAAAGCAATACCCTGGGTCGAAAAGTTCCGGCCAAAGTCTCTCGCCGACGTCGCTGCCCACCGCGACATTGTTGACACCATTGATAAGCTTACGAGTGAGAATAGGCTGCCACATCTTCTGTTGTACGGCCCTCCCGGCACTGGCAAGACTTCAACTATTTTAGCGGTTGCTCGCAAGCTTTATGGAACAAATTACCACAACATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTTAGACAGCAGATTCAGGATTTTGCAAGTACTCAAAGCTTTTCATTTGGGGCAAAAGCATCCGTAAAATTGGTACTCTTGGACGAGGCAGATGCCATGACTAAGGATGCACAGTTTGCCTTACGTAGAGTAATTGAGAAATATACGAAAAGTACAAGGTTTGCTCTTATTTGTAATCACGTGAATAAGATTATTCCCGCATTACAGTCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAATTTTCATGTCACTGAACGACTCAGATATGTTGTTGAGGCTGAGAGGTTGGACGTCACTGAGAGTGGCTTGGCAGCTCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACACATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTATGCACAGGAAATCCAATGCCCAAAGACATAGAGCAAATATCATTTTGGCTACTGAATGAACCATTTTCTGACAGTTTTAAGCGAATATCTGAAATGAAGACGAGAAAAGGATTAGCTTTGGTTGATATAGTGAGAGAAGTCACCATGTTTGTTTTTAAGATCAAGATGCCATCGGATGTCAGAGTTCAGTTGATTAATGATCTGGCTGACATAGAGTACAGGATGAGTTTCGGATGCAACGACAAGTTACAACTCGGATCGCTCATCTCATCCTTTACCCGAGCCAGATCTGCACTCGTTGGTGCTGCAGAGTAG 1083 44.14 MSEVIAVMDIDDDNVNNETEKAVKGTNVAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVVEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRISEMKTRKGLALVDIVREVTMFVFKIKMPSDVRVQLINDLADIEYRMSFGCNDKLQLGSLISSFTRARSALVGAAE 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2500010 2505868 + Sed0023365.1 Sed03g0419 705906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0419 360 FunFam Replication factor C subunit 5 261 358 - -
Sed03g0419 360 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 254 IPR027417 -
Sed03g0419 360 Gene3D - 199 260 - -
Sed03g0419 360 SUPERFAMILY post-AAA+ oligomerization domain-like 261 351 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Sed03g0419 360 CDD AAA 57 195 - -
Sed03g0419 360 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 38 352 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Sed03g0419 360 SMART AAA_5 69 199 IPR003593 GO:0016887(InterPro)
Sed03g0419 360 Pfam Replication factor C C-terminal domain 261 346 IPR013748 -
Sed03g0419 360 Pfam ATPase family associated with various cellular activities (AAA) 73 195 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Sed03g0419 360 Gene3D - 33 195 IPR027417 -
Sed03g0419 360 FunFam Replication factor C subunit 5 198 260 - -
Sed03g0419 360 Gene3D - 261 357 - -
Sed03g0419 360 FunFam Replication factor C subunit 5 31 196 - -
Sed03g0419 360 CDD HLD_clamp_RFC 200 258 IPR047854 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0419 Sed-Chr3:2500010 Sed03g1302 Sed-Chr3:8338948 3.50E-55 dispersed
Sed03g0419 Sed-Chr3:2500010 Sed03g0420 Sed-Chr3:2500010 2.30E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0419 K10756 - csv:101217230 674.47