Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0420 ATGTCGGAAGTAATTGCTGTCATGGATATCGACGACGATAATGTCAACAACGAAACTGAAAAGGCAGTTAAGGGCACAAATGTCGCCGCCGCACCCGACGGCAAAGCAATACCCTGGGTCGAAAAGTTCCGGCCAAAGTCTCTCGCCGACGTCGCTGCCCACCGCGACATTGTTGACACCATTGATAAGCTTACGAGTGAGAATAGGCTGCCACATCTTCTGTTGTACGGCCCTCCCGGCACTGGCAAGACTTCAACTATTTTAGCGGTTGCTCGCAAGCTTTATGGAACAAATTACCACAACATGATTCTGGAGCTGAACGCATCAGATGATAGAGGGATAGATGTTGTTAGACAGCAGATTCAGGATTTTGCAAGTACTCAAAGCTTTTCATTTGGGGCAAAAGCATCCGTAAAATTGGTACTCTTGGACGAGGCAGATGCCATGACTAAGGATGCACAGTTTGCCTTACGTAGAGTAATTGAGAAATATACGAAAAGTACAAGGTTTGCTCTTATTTGTAATCACGTGAATAAGATTATTCCCGCATTACAGTCAAGATGTACCCGCTTCCGATTTGCTCCCCTCGATAATTTTCATGTCACTGAACGACTCAGATATGTTGTTGAGGCTGAGAGGTTGGACGTCACTGAGAGTGGCTTGGCAGCTCTTGTTCGACTTTGCAGTGGTGATATGAGAAAGGCTTTAAATATTCTGCAGTCAACACATATGGCTTCTCAGCATATTACTGAAGAAGCTGTATACCTATGCACAGGAAATCCAATGCCCAAAGACATAGAGCAAATATCATTTTGGCTACTGAATGAACCATTTTCTGACAGTTTTAAGCGTAATTGGTTTTCTCTGAAATTTTCCATTTAA 882 43.76 MSEVIAVMDIDDDNVNNETEKAVKGTNVAAAPDGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTGKTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKASVKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDNFHVTERLRYVVEAERLDVTESGLAALVRLCSGDMRKALNILQSTHMASQHITEEAVYLCTGNPMPKDIEQISFWLLNEPFSDSFKRNWFSLKFSI 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2500010 2505868 + Sed0023365.2 Sed03g0420 705907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0420 293 Gene3D - 199 260 - -
Sed03g0420 293 CDD AAA 57 195 - -
Sed03g0420 293 Gene3D - 33 195 IPR027417 -
Sed03g0420 293 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 254 IPR027417 -
Sed03g0420 293 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 38 283 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Sed03g0420 293 SMART AAA_5 69 199 IPR003593 GO:0016887(InterPro)
Sed03g0420 293 FunFam Replication factor C subunit 5 198 260 - -
Sed03g0420 293 FunFam Replication factor C subunit 5 31 196 - -
Sed03g0420 293 CDD HLD_clamp_RFC 200 258 IPR047854 -
Sed03g0420 293 Pfam ATPase family associated with various cellular activities (AAA) 73 195 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0420 Sed-Chr3:2500010 Sed03g1302 Sed-Chr3:8338948 1.30E-52 dispersed
Sed03g0419 Sed-Chr3:2500010 Sed03g0420 Sed-Chr3:2500010 2.30E-160 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0420 K10756 - csv:101217230 543.888