Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0426 ATGTCCGCCCATAATCGCCGGCCGTCGTTTTCGTCGTCGACGACATCGTCGTTGGCTAAACGACAAGCGTCGTCGGCATCGGTGCCGGACAATGTCGGAAAGGTTATGGCAGTTCCGCCGCATTTAGCGAAGAAGCGAGCCCCACTCGGTAATCTTACGAATGTCAAGAATGATTCTCAGGGTGCTTCGAAAAGCTCTGTTCCACCCCCTGTTATGGTACCTTGTGCAACCAAAGCTGTCAAGGCCAGAAAAAGTTCCCCTGCTGGAACTCGTAGCACAAACTTGCCTACAAATAATAAGCCTCCATTGATCGATGCTGTTAAAAGAACGAGTGCAGTTGCCCCTAGCAATGTCACAGTTTTCTCTAAAACTAATGTCATTGCTGTCTCAAGTAGTATGGATATCTCCCCCACTAAATCAGATGGAGTTTCCGTTTCCTTAGATGAAACTATGTCTTCTTGTGATTCGTTTAAGAGTCCCGACGTCGAGTACATGGACGATAATGATGTTCCTGCAGTTGATTCCATTGAGAGGAAAACTAAAAGTAGTCTCTGCATTTCAGCTCATGCATCCATTAAAGGCAGTGTATGCAATAGAGATGTATTTGCCGAAATGGAAATGGATAGTGATATCATTGATGTTGATACCAATTTCATGGATCCCCAACAATGTGCTACAATTGCTTGTGATATTTACAAGCATTTACGAGCATCTGAGGTAAAGAAAAGGCCTTCTCGAGACTATATTGAAAAAATTCAGAAGGATATAAGTTCAAACATGCGTGCCATACTGGTTGATTGGCTTGTGGAGGTGGCAGAAGAGTATAGGCTTGTGCCAGATACTCTATATTTGACAGTGAACTACATCGATCGATACCTATCTGGAAATTCGATGGATCGACAACGGTTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGAAGAGGTTTTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTTGAAATGACTGCTCCAACACCGAAATGTTTCTTAAGACGATTCGTTCGGACTGCTCAAGGTGCGGACGAAGTTTTTTCAATACAGTTTGAGTGCTTGTCCAACTTCCTCGCCGAATTATCTCTTTTAGAATACAACATGCTTGGTTACGCTCCATCGCTTATTGCAGCTTCAGCGATTTTCTTGGCAAAGTTCATTCTTCTCCCAACTAAGAGACCATGGAACTCAACCTTGCAACATTACACACATTATCAGCCATTTGATCTTGTTGATTGTGTTAAGGATTTACATCGCCTATGCTGTAGCACCCATAATTCTAGCTTACCAGCCATTAGAGAGAAATACAGCCAACATAAGTACAAACACGTGGCGAAGAAGTATTGCCCTCCGACGATACCTCCGGAGTTTTTTGAGAATCGAACGCAGTAA 1488 42.47 MSAHNRRPSFSSSTTSSLAKRQASSASVPDNVGKVMAVPPHLAKKRAPLGNLTNVKNDSQGASKSSVPPPVMVPCATKAVKARKSSPAGTRSTNLPTNNKPPLIDAVKRTSAVAPSNVTVFSKTNVIAVSSSMDISPTKSDGVSVSLDETMSSCDSFKSPDVEYMDDNDVPAVDSIERKTKSSLCISAHASIKGSVCNRDVFAEMEMDSDIIDVDTNFMDPQQCATIACDIYKHLRASEVKKRPSRDYIEKIQKDISSNMRAILVDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRTAQGADEVFSIQFECLSNFLAELSLLEYNMLGYAPSLIAASAIFLAKFILLPTKRPWNSTLQHYTHYQPFDLVDCVKDLHRLCCSTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFENRTQ 495
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2533557 2540477 + Sed0002430.1 Sed03g0426 705913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0426 495 CDD CYCLIN_AtCycA-like_rpt2 359 473 - -
Sed03g0426 495 CDD CYCLIN_AtCycA_like_rpt1 220 355 - -
Sed03g0426 495 ProSitePatterns Cyclins signature. 261 292 IPR048258 -
Sed03g0426 495 Gene3D - 244 357 - -
Sed03g0426 495 PIRSF Cyclin_A_B_D_E 5 488 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Sed03g0426 495 MobiDBLite consensus disorder prediction 1 102 - -
Sed03g0426 495 FunFam Mitotic cyclin 6 244 344 - -
Sed03g0426 495 MobiDBLite consensus disorder prediction 1 29 - -
Sed03g0426 495 Gene3D - 230 478 - -
Sed03g0426 495 SMART Cyclin_C_2 359 482 IPR004367 -
Sed03g0426 495 SMART cyclin_7 266 350 IPR013763 -
Sed03g0426 495 SMART cyclin_7 363 451 IPR013763 -
Sed03g0426 495 MobiDBLite consensus disorder prediction 86 100 - -
Sed03g0426 495 SUPERFAMILY Cyclin-like 359 485 IPR036915 -
Sed03g0426 495 PANTHER CYCLINS 209 470 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Sed03g0426 495 SUPERFAMILY Cyclin-like 220 356 IPR036915 -
Sed03g0426 495 Pfam Cyclin, N-terminal domain 230 357 IPR006671 -
Sed03g0426 495 Pfam Cyclin, C-terminal domain 359 479 IPR004367 -
Sed03g0426 495 MobiDBLite consensus disorder prediction 52 66 - -
Sed03g0426 495 FunFam Cyclin A1 346 478 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0424 Sed-Chr3:2527379 Sed03g0426 Sed-Chr3:2533557 3.40E-247 dispersed
Sed03g0426 Sed-Chr3:2533557 Sed13g1791 Sed-Chr13:22959380 1.50E-85 dispersed
Sed03g0425 Sed-Chr3:2527379 Sed03g0426 Sed-Chr3:2533557 3.60E-233 tandem
Sed03g0426 Sed-Chr3:2533557 Sed03g0427 Sed-Chr3:2534219 5.80E-271 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0426 K06627 - csv:101221569 842.417