Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0427 | ATGTCCGCCCATAATCGCCGGCCGTCGTTTTCGTCGTCGACGACATCGTCGTTGGCTAAACGACAAGCGTCGTCGGCATCGGTGCCGGACAATGTCGGAAAGGTTATGGCAGTTCCGCCGCATTTAGCGAAGAAGCGAGCCCCACTCGGTAATCTTACGAATGTCAAGAATGATTCTCAGGGTGCTTCGAAAAGCTCTGTTCCACCCCCTGTTATGGTACCTTGTGCAACCAAAGCTGTCAAGGCCAGAAAAAGTTCCCCTGCTGGAACTCGTAGCACAAACTTGCCTACAAATAATAAGCCTCCATTGATCGATGCTGTTAAAAGAACGAGTGCAGTTGCCCCTAGCAATGTCACAGTTTTCTCTAAAACTAATGTCATTGCTGTCTCAAGTAGTATGGATATCTCCCCCACTAAATCAGATGGAGTTTCCGTTTCCTTAGATGAAACTATGTCTTCTTGTGATTCGTTTAAGAGTCCCGACGTCGAGTACATGGACGATAATGATGTTCCTGCAGTTGATTCCATTGAGAGGAAAACTAAAAGTAGTCTCTGCATTTCAGCTCATGCATCCATTAAAGGCAGTGTATGCAATAGAGATGTATTTGCCGAAATGGAAATGGATAGTGATATCATTGATGTTGATACCAATTTCATGGATCCCCAACAATGTGCTACAATTGCTTGTGATATTTACAAGCATTTACGAGCATCTGAGGTAAAGAAAAGGCCTTCTCGAGACTATATTGAAAAAATTCAGAAGGATATAAGTTCAAACATGCGTGCCATACTGGTTGATTGGCTTGTGGAGGTGGCAGAAGAGTATAGGCTTGTGCCAGATACTCTATATTTGACAGTGAACTACATCGATCGATACCTATCTGGAAATTCGATGGATCGACAACGGTTACAGTTGCTTGGTGTTGCTTGCATGATGATTGCTTCAAAATATGAAGAGATCTGTGCACCTCAAGTGGAAGAATTTTGTTACATAACTGATAACACATATTTTAAAGAAGAGGTTTTGCAAATGGAATCTTCTGTCTTGAATTACTTGAAGTTTGAAATGACTGCTCCAACACCGAAATGTTTCTTAAGACGATTCGTTCGGACTGCTCAAGGTGCGGACGAAGTTTTTTCAATACAGTTTGAGTGCTTGTCCAACTTCCTCGCCGAATTATCTCTTTTAGAATACAACATGCTTGGTTACGCTCCATCGCTTATTGCAGCTTCAGCGATTTTCTTGGCAAAGTTCATTCTTCTCCCAACTAAGAGACCATGGAACTCAACCTTGCAACATTACACACATTATCAGCCATTTGATCTTGTTGATTGTGTTAAGGATTTACATCGCCTATGCTGTAGCACCCATAATTCTAGCTTACCAGCCATTAGAGAGAAATACAGCCAACATAAGTACAAACACGTGGCGAAGAAGTATTGCCCTCCGACGATACCTCCGGAGTTTTTTGAGAATCGAACGCAGTAA | 1488 | 42.47 | MSAHNRRPSFSSSTTSSLAKRQASSASVPDNVGKVMAVPPHLAKKRAPLGNLTNVKNDSQGASKSSVPPPVMVPCATKAVKARKSSPAGTRSTNLPTNNKPPLIDAVKRTSAVAPSNVTVFSKTNVIAVSSSMDISPTKSDGVSVSLDETMSSCDSFKSPDVEYMDDNDVPAVDSIERKTKSSLCISAHASIKGSVCNRDVFAEMEMDSDIIDVDTNFMDPQQCATIACDIYKHLRASEVKKRPSRDYIEKIQKDISSNMRAILVDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNSMDRQRLQLLGVACMMIASKYEEICAPQVEEFCYITDNTYFKEEVLQMESSVLNYLKFEMTAPTPKCFLRRFVRTAQGADEVFSIQFECLSNFLAELSLLEYNMLGYAPSLIAASAIFLAKFILLPTKRPWNSTLQHYTHYQPFDLVDCVKDLHRLCCSTHNSSLPAIREKYSQHKYKHVAKKYCPPTIPPEFFENRTQ | 495 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2534219 | 2540477 | + | Sed0002430.2 | Sed03g0427 | 705914 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0427 | 495 | CDD | CYCLIN_AtCycA-like_rpt2 | 359 | 473 | - | - | |
Sed03g0427 | 495 | CDD | CYCLIN_AtCycA_like_rpt1 | 220 | 355 | - | - | |
Sed03g0427 | 495 | ProSitePatterns | Cyclins signature. | 261 | 292 | IPR048258 | - | |
Sed03g0427 | 495 | Gene3D | - | 244 | 357 | - | - | |
Sed03g0427 | 495 | PIRSF | Cyclin_A_B_D_E | 5 | 488 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Sed03g0427 | 495 | MobiDBLite | consensus disorder prediction | 1 | 102 | - | - | |
Sed03g0427 | 495 | FunFam | Mitotic cyclin 6 | 244 | 344 | - | - | |
Sed03g0427 | 495 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Sed03g0427 | 495 | Gene3D | - | 230 | 478 | - | - | |
Sed03g0427 | 495 | SMART | Cyclin_C_2 | 359 | 482 | IPR004367 | - | |
Sed03g0427 | 495 | SMART | cyclin_7 | 266 | 350 | IPR013763 | - | |
Sed03g0427 | 495 | SMART | cyclin_7 | 363 | 451 | IPR013763 | - | |
Sed03g0427 | 495 | MobiDBLite | consensus disorder prediction | 86 | 100 | - | - | |
Sed03g0427 | 495 | SUPERFAMILY | Cyclin-like | 359 | 485 | IPR036915 | - | |
Sed03g0427 | 495 | PANTHER | CYCLINS | 209 | 470 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Sed03g0427 | 495 | SUPERFAMILY | Cyclin-like | 220 | 356 | IPR036915 | - | |
Sed03g0427 | 495 | Pfam | Cyclin, N-terminal domain | 230 | 357 | IPR006671 | - | |
Sed03g0427 | 495 | Pfam | Cyclin, C-terminal domain | 359 | 479 | IPR004367 | - | |
Sed03g0427 | 495 | MobiDBLite | consensus disorder prediction | 52 | 66 | - | - | |
Sed03g0427 | 495 | FunFam | Cyclin A1 | 346 | 478 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0425 | Sed-Chr3:2527379 | Sed03g0427 | Sed-Chr3:2534219 | 3.60E-233 | dispersed | |
Sed03g0427 | Sed-Chr3:2534219 | Sed13g1791 | Sed-Chr13:22959380 | 1.50E-85 | dispersed | |
Sed03g0426 | Sed-Chr3:2533557 | Sed03g0427 | Sed-Chr3:2534219 | 5.80E-271 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0427 | K06627 | - | csv:101221569 | 842.417 |