Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0428 ATGCCTCTGCTTCTCCTCTGTTTCCTTATCCTCTTTTCTTCTCTCCTTCCGCCGCCGTACACGGCGGCAGCTCACGGCGGCGACACCGTAATCTTCACCACACTTGGAAGATCCTTCTACGCCTTCGACATCTTCACCCTCCCCGCCGACGACGGACACGTTTCCCCTTCTTCAGCGGACGAAACCCTAATCACCGACGGCGAGTCCGTCAATTTCAATGGCCATTTCCCTTCCTCCACGATTCTATCTCTGATTACGAACAAAACAGATTCCTTACAACCGGATTTAGAACTCGTTTATGTCACAGAGAGAAACGGAATCTCTAGAATCTTCTACGACGCCATTTTTGACGGTGCCGGAATTAGCGCAAGACGGCGGTCGGAGCTCGAGATTCCTCATCGATTGCAAATTCCTCTATTGGATGACAATCAGAACGATGAGTTCAAGGTTTCATTCAAAGATCGGCCTAGTTTAAGCGGCGAGTATTTGGTGTATGTGTCGACTCATGAGGATCCTGGTGAGTCGAGAACGAGTTGGGCGGCTGTGTACTCGAGCAATTTGAAATCGGGTAAAACTCGGCGATTGACGCCTTATGGTATTGCCGATTTCAGCCCGTCGGTTTCTCCATCTGGAGTTTGGACGGCGGTGGCTTCTTACGGCGAGAAGGGTTGGGCCGGCGACGTTCAGGATTTAAACACCGATTTATACATCTTCCTAACTCGCGACGGAACTCGCCGAGTTAAAATCGTCGAACACGGTGGCTGGCCGTGCTGGGCCGACGATTCGACTCTGTATTTTCACCGGCGAGGCGATGATCAATGGTTGAGTATTTACAGAGCTATTCTACCGATTAATGGTGAAATTTCTCCCGATTCAGTGATAATCGAACGACTCACTCCACCTGGTTTGCACGTTTTCACTCCGGCCACTACTCCGGCGAATAAAAACCTCATCGCCGTCGCGACGAGAAGACCCGAATCCGCTTTTCGTCATATAGAGCAGTTCAACCTCATCACCGGCGAGTTCAAGGAGCTAACAAAACCGATTTCGCCTAATTCTCACCACTTAAATCCTTTCATCTCCGCCGACGGGACTCGTATCGGTTACCACAGGTGTAGAGGCGACGGCAATGGAAAAAGAAACAACCCACTGTTCTTCGAGAATGTTCGTAGCCCTGTTGCTAATTTATCCCTATTCAGATTCGCCGGTTCTTTCCCCTCTTTTTCCCCCGCCGGTGACCGTATAGCCTACGCGGATTTCCCCGGATTATACATTGTCAATCACGACGGTTCGAATCGACGGGAGGTTTTCTCCGGCTTGGCGTTCTCGACGGCGTGGGATCCAGTACGGGAAGGAGTTGTGTACACCAGCGCCGGCCCCGATTTTGCGCCGGTGAGTTCCCAGGTTGATATCATATCAATCAACGTGGATAACAACGGCGACGACGAGACGAATTTCAAGAAACTAACAACGGACGGCAAAAACAACGCGTTCCCGTCGCCGTCGCCTGACGGGAAATGGATCGTTTTCCGATCGGGTCGCTCCGGTTTCAAAAACTTGTACATAATGGACGCCGTTGACGGCGAGAGCAAATCGCTCCGGCGTCTAACGGCCGGCGAATGGACGGATACGATGTGCAGTTGGTCGCCGGACGGCGATTGGATCGCGTTTTCATCGGACCGTGACAGTCCCGGAAGTTTCGAGCTGTTCGTGATCCACCCTAACGGAACCGGGTTGAGGAAGCTGTTTCAGAGCGGGTCGGCGGGTCGGGCGAACCACCCGAGTTGGAGATCCGATGGGAAGGTTCTAGTGTTCACCACGGACAATGCGGGAATATCTGCTGAGCCAATCTCGAATCCACATCACTATCAACCCTATGGTGAGATCTACACCGTTAAATTGGACGGCTCTGATCTTCAGAGGCTGACTCACAATTCTTACGAGGATGGGACCCCCACGTGGAGCCCACTTTACATCAATCCTGCCAATGTGAAGAGCTCGTATGACGTGACCCCATGTGGCTTTGAAGATTGTCACTGGCTTAATACAAATAAGGCTCATAATGCTATTGGGCCAGTCTTAACCGGGCCTCAGTGCAGCCCATAA 2106 51.8 MPLLLLCFLILFSSLLPPPYTAAAHGGDTVIFTTLGRSFYAFDIFTLPADDGHVSPSSADETLITDGESVNFNGHFPSSTILSLITNKTDSLQPDLELVYVTERNGISRIFYDAIFDGAGISARRRSELEIPHRLQIPLLDDNQNDEFKVSFKDRPSLSGEYLVYVSTHEDPGESRTSWAAVYSSNLKSGKTRRLTPYGIADFSPSVSPSGVWTAVASYGEKGWAGDVQDLNTDLYIFLTRDGTRRVKIVEHGGWPCWADDSTLYFHRRGDDQWLSIYRAILPINGEISPDSVIIERLTPPGLHVFTPATTPANKNLIAVATRRPESAFRHIEQFNLITGEFKELTKPISPNSHHLNPFISADGTRIGYHRCRGDGNGKRNNPLFFENVRSPVANLSLFRFAGSFPSFSPAGDRIAYADFPGLYIVNHDGSNRREVFSGLAFSTAWDPVREGVVYTSAGPDFAPVSSQVDIISINVDNNGDDETNFKKLTTDGKNNAFPSPSPDGKWIVFRSGRSGFKNLYIMDAVDGESKSLRRLTAGEWTDTMCSWSPDGDWIAFSSDRDSPGSFELFVIHPNGTGLRKLFQSGSAGRANHPSWRSDGKVLVFTTDNAGISAEPISNPHHYQPYGEIYTVKLDGSDLQRLTHNSYEDGTPTWSPLYINPANVKSSYDVTPCGFEDCHWLNTNKAHNAIGPVLTGPQCSP 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2541481 2543778 - Sed0002798.1 Sed03g0428 705915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0428 701 Pfam WD40-like Beta Propeller Repeat 589 608 IPR011659 -
Sed03g0428 701 Pfam WD40-like Beta Propeller Repeat 487 522 IPR011659 -
Sed03g0428 701 Pfam WD40-like Beta Propeller Repeat 533 571 IPR011659 -
Sed03g0428 701 Gene3D - 421 624 IPR011042 -
Sed03g0428 701 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 23 680 - -
Sed03g0428 701 SUPERFAMILY Tricorn protease N-terminal domain 404 656 - -
Sed03g0428 701 SUPERFAMILY DPP6 N-terminal domain-like 157 461 - -
Sed03g0428 701 Gene3D - 139 389 IPR011042 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0428 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0428 Sed-Chr3:2541481 Sed07g0618 Sed-Chr7:4684416 3.50E-128 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g228 . . . . . . . . . Cmo15g00667 . . . . Sed03g0428 . . Bhi04g01877 Tan11g1249 Cmetu03g0593 . Hepe02g2220 . Lcy10g1246 Cla08g00617 Cam08g1031 Cec08g0620 Cco08g0732 Clacu08g0741 . Cre08g0549 . . Cone17ag0825 . . . . . . Blo18g00176 . Bda01g01455 Bpe02g01652 . Bma01g00803 . . . . . . . Car15g00607 . . . . . . . . . . . . . . . . Lsi08g00457 . Chy03g00761 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008521 3 1 1 3 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 35