Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0449 ATGGTCACATCAGGGCCACCCACTCCTATGGGTGGGGGTGGACAGTCTGTTTCCCCGGCGCTTCTGCGATCGAATTCAGGATTGCATGGAGTTCAAGGTGGTATGTTGCCATCTCAGGCAGCCTTTTCGTCTCTTGTATCGCCTCGGAATCAGTTCAATAGTATGAATATGCTCGGTAATATGTCCAATGCGTCTCCTCTTCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACGTCCATGTCCTGGCAGTAGCCACCCCGGTGCGGAGCCAGATTCTCTTTCCGGTGTTGGCAATGGAATGAGCTTTAATAATCCTTCGTCGTCGTTTGTAGCGTCGAATATGACAAACCCCGTTTCATCTGTCCAAGGGCAGAATCCACAATTTTCTAACCTCTCTACCAGCCAGTTGTTATCAGATCAGCAGAAGTCTCAACAACTTGAGCCCCAGAATTTCCAACATAGTCAACAGTCTATGGAACAGTTTTCTGCAGTTCAGAGCAATCAACAGCAACAATTTCAAGCAATTCGAGGGTTGACCGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACTGGCAATGATCAACTTGGATCTCAGCAGCAGCAGCAGCATTTGCAAACATTGAGAAATCTTGGTCAAGGTCAAGTGAAATTAGAATCACAACGACTTCAATCACTGCAAGGCTTGGCACCAGTAAAAATGGAAGCCCAACAATCCGACCAGTCATTATTTCTGCAACAGCATCAACAACATCAGCAGCATCAACATCAACAACATCAGCAGCATCAACATCAGCAACATCAGCATCCACATCAACAACAATCACCACAACAGTTTCTCCATATGTCTAGACAGTCCTCTCAGGCAGCGGCTGCCCACATTAATCTTATGCACCAACAAAGGATTTTGCATTTGCAACAACAACAGCAACAACATCTCTTAAAAAGTATGCCTCCTCAACGACCTCAATTGCAACAACATTTCCAACAGCAGAACCTTCCGCTAAGATCTACCATAAAACCAGGTTATGAACCTGGAATGTGTGCTCGGCGTCTGACTTATTATATGTATCATCAACAAAACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAATGAATACTATGCACCTCATGCTAAAAAGAAGTGGTGTGTTTCCATGTACGGAAGTGGGCGACAGACTGGAGTTTTTCCTCAGGATGTATGGCATTGTGAAATATGCAATCGGAAGCCTGGTCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAAATTAAGTATGAAAGTGGTACTATAGAGGAGCTACTTTATCTCGACATGCCTCGTGAATATCATAATGCTTCTGGTCAAATTGTTCTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTGCGAATTGTTTTCTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCTAGGAGATTGTTGATACCTCAGGTTAGTCAACTTGGGGCAGCAGCTCAAAAGTACCAGTCTGCCATTCAGAACGCATCATCCAATTTATCAACTCCAGAATTGCAAAATAATTGTAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACGAAGAGATATGTACGTTGCCTTCAGATATCCGAGGTGGTTAATAGCATGAAGGACTTGATCGACTACAGCAAAGAAACAGGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCAGGGCTTACAAACCAAGCTCAAGTTTCTGACGAGCAGCAGCGGCAGCAACAACAGCAATCATCCACTGCCCAGCACTCAAATAATAACCAGAGTTCTGTCCAGTCTTCTGCAGTGCAGCTTACAGCTAACAATGGTGTGGCCAGTGTAAATAACGCCATCAACCAACCTTCAACATCAAACTCAGCAAGCACCATTGTTGGGCTTCTTCACCAGAATTCTATGAACTCCAGACAGCAGAACTCCATGGCTAACCCTAGCAACTCGTATGGGGGAAGTTCTGTTCAGATTCCATCTCCTGGTTCATCCAGTACAATTCAACCATCGCAACCGAACCCTTCAACGTTCCAACCACCAACTCCCTCATCATCTAACAATCTTTCACAACCATTGCATACAGCTGCAAAGAGTGCCAATCAGATGAGTGCAGCTAATTCTCCGGCAAATATCTCTATGCATCAGCCCTCTTTGTCTGGAGATGTTGATCCTAGCGATACACAGTCCTCCGTGCAAAAGATCTTACAGGAGATGATGATGAATAATCAAATGAATGGTCCGACAAGTCTTGTTGGTGTTGGTTCGGTGGTCAATGATATGAAAAGTGTGAATGGGGTCTTACCACCTACAAGCAATATGAGTCTCAACAATGGGAATTTCATTGGAGGGAATGGAACAACCAATGGTGGCTCAGGCATGGGAGGAGGAGGATATGGATCCATGGGGAGTGGGCTTGGGCAGCCTACCATGGTTAATGGAATGAGGAATGCGATGGGAAATAACTCCATTATGAACCGACGAATAGGCATGGCGTCGCTCGCTCTAGAACAAAGCATGAACGGTCAATCGCAGGATTTGGGAAACCAGATTCTAAGTGGACTAGGTGCTGTAAACGGCTTCAGCAATCTCCAATTTGACTTTAAGCCATCCCCATGA 2784 44.86 MVTSGPPTPMGGGGQSVSPALLRSNSGLHGVQGGMLPSQAAFSSLVSPRNQFNSMNMLGNMSNASPLLNQSFGNGAPNSGRPCPGSSHPGAEPDSLSGVGNGMSFNNPSSSFVASNMTNPVSSVQGQNPQFSNLSTSQLLSDQQKSQQLEPQNFQHSQQSMEQFSAVQSNQQQQFQAIRGLTGVGPVKLEPQVTGNDQLGSQQQQQHLQTLRNLGQGQVKLESQRLQSLQGLAPVKMEAQQSDQSLFLQQHQQHQQHQHQQHQQHQHQQHQHPHQQQSPQQFLHMSRQSSQAAAAHINLMHQQRILHLQQQQQQHLLKSMPPQRPQLQQHFQQQNLPLRSTIKPGYEPGMCARRLTYYMYHQQNRPEDNNIDFWRKFVNEYYAPHAKKKWCVSMYGSGRQTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTIEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGLTNQAQVSDEQQRQQQQQSSTAQHSNNNQSSVQSSAVQLTANNGVASVNNAINQPSTSNSASTIVGLLHQNSMNSRQQNSMANPSNSYGGSSVQIPSPGSSSTIQPSQPNPSTFQPPTPSSSNNLSQPLHTAAKSANQMSAANSPANISMHQPSLSGDVDPSDTQSSVQKILQEMMMNNQMNGPTSLVGVGSVVNDMKSVNGVLPPTSNMSLNNGNFIGGNGTTNGGSGMGGGGYGSMGSGLGQPTMVNGMRNAMGNNSIMNRRIGMASLALEQSMNGQSQDLGNQILSGLGAVNGFSNLQFDFKPSP 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2690155 2697846 - Sed0013770.2 Sed03g0449 705936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0449 927 MobiDBLite consensus disorder prediction 694 786 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 66 168 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 610 655 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 270 292 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 188 208 - -
Sed03g0449 927 Pfam LIM-domain binding protein 354 607 IPR029005 -
Sed03g0449 927 MobiDBLite consensus disorder prediction 99 168 - -
Sed03g0449 927 PANTHER LIM DOMAIN-BINDING PROTEIN 268 918 IPR029005 GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER)
Sed03g0449 927 MobiDBLite consensus disorder prediction 694 728 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 194 208 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 240 292 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 736 786 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 1 32 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 66 81 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 240 257 - -
Sed03g0449 927 MobiDBLite consensus disorder prediction 603 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0449 Sed-Chr3:2690155 Sed11g1321 Sed-Chr11:28958595 0.00E+00 dispersed
Sed03g0449 Sed-Chr3:2690155 Sed03g0450 Sed-Chr3:2690762 0.00E+00 tandem
Sed11g1320 Sed-Chr11:28958595 Sed03g0449 Sed-Chr3:2690155 0.00E+00 wgd
Sed03g0449 Sed-Chr3:2690155 Sed07g2871 Sed-Chr7:43447024 1.90E-246 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0449 - - - 0.0