Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0450 | ATGGTCACATCAGGGCCACCCACTCCTATGGGTGGGGGTGGACAGTCTGTTTCCCCGGCGCTTCTGCGATCGAATTCAGGATTGCATGGAGTTCAAGGTGGTATGTTGCCATCTCAGGCAGCCTTTTCGTCTCTTGTATCGCCTCGGAATCAGTTCAATAGTATGAATATGCTCGGTAATATGTCCAATGCGTCTCCTCTTCTTAATCAATCATTTGGAAATGGGGCTCCTAATTCTGGACGTCCATGTCCTGGCAGTAGCCACCCCGGTGCGGAGCCAGATTCTCTTTCCGGTGTTGGCAATGGAATGAGCTTTAATAATCCTTCGTCGTCGTTTGTAGCGTCGAATATGACAAACCCCGTTTCATCTGTCCAAGGGCAGAATCCACAATTTTCTAACCTCTCTACCAGCCAGTTGTTATCAGATCAGCAGAAGTCTCAACAACTTGAGCCCCAGAATTTCCAACATAGTCAACAGTCTATGGAACAGTTTTCTGCAGTTCAGAGCAATCAACAGCAACAATTTCAAGCAATTCGAGGGTTGACCGGTGTTGGACCTGTAAAGTTGGAGCCTCAAGTGACTGGCAATGATCAACTTGGATCTCAGCAGCAGCAGCAGCATTTGCAAACATTGAGAAATCTTGGTCAAGGTCAAGTGAAATTAGAATCACAACGACTTCAATCACTGCAAGGCTTGGCACCAGTAAAAATGGAAGCCCAACAATCCGACCAGTCATTATTTCTGCAACAGCATCAACAACATCAGCAGCATCAACATCAACAACATCAGCAGCATCAACATCAGCAACATCAGCATCCACATCAACAACAATCACCACAACAGTTTCTCCATATGTCTAGACAGTCCTCTCAGGCAGCGGCTGCCCACATTAATCTTATGCACCAACAAAGGATTTTGCATTTGCAACAACAACAGCAACAACATCTCTTAAAAAGTATGCCTCCTCAACGACCTCAATTGCAACAACATTTCCAACAGCAGAACCTTCCGCTAAGATCTACCATAAAACCAGGTTATGAACCTGGAATGTGTGCTCGGCGTCTGACTTATTATATGTATCATCAACAAAACAGACCTGAAGACAACAACATAGATTTCTGGAGGAAATTTGTTAATGAATACTATGCACCTCATGCTAAAAAGAAGTGGTGTGTTTCCATGTACGGAAGTGGGCGACAGACTGGAGTTTTTCCTCAGGATGTATGGCATTGTGAAATATGCAATCGGAAGCCTGGTCGTGGCTTTGAAGCAACTGCTGAAGTTCTTCCCAGGCTTTTTAAAATTAAGTATGAAAGTGGTACTATAGAGGAGCTACTTTATCTCGACATGCCTCGTGAATATCATAATGCTTCTGGTCAAATTGTTCTGGATTATGCAAAAGCAATACAGGAAAGTGTTTTTGAGCAACTTCGTGTTGTTCGTGATGGCCAACTGCGAATTGTTTTCTCTCCAGACCTTAAGATATGTTCATGGGAATTCTGTGCTCGACGCCATGAAGAACTTATTCCTAGGAGATTGTTGATACCTCAGGTTAGTCAACTTGGGGCAGCAGCTCAAAAGTACCAGTCTGCCATTCAGAACGCATCATCCAATTTATCAACTCCAGAATTGCAAAATAATTGTAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGAAGTTCCGCTGGTAAATGACTTGGGATATACGAAGAGATATGTACGTTGCCTTCAGATATCCGAGGTGGTTAATAGCATGAAGGACTTGATCGACTACAGCAAAGAAACAGGGATTGGGCCAATGGATAGTCTAGCCAAGTTTCCTCGGAGGACTAGTTCATCATCAGGGCTTACAAACCAAGCTCAAGTTTCTGACGAGCAGCAGCGGCAGCAACAACAGCAATCATCCACTGCCCAGCACTCAAATAATAACCAGAGTTCTGTCCAGTCTTCTGCAGTGCAGCTTACAGCTAACAATGGTGTGGCCAGTGTAAATAACGCCATCAACCAACCTTCAACATCAAACTCAGCAAGCACCATTGTTGGGCTTCTTCACCAGAATTCTATGAACTCCAGACAGCAGAACTCCATGGCTAACCCTAGCAACTCGTATGGGGGAAGTTCTGTTCAGATTCCATCTCCTGGTTCATCCAGTACAATTCAACCATCGCAACCGAACCCTTCAACGTTCCAACCACCAACTCCCTCATCATCTAACAATCTTTCACAACCATTGCATACAGCTGCAAAGAGTGCCAATCAGATGAGTGCAGCTAATTCTCCGGCAAATATCTCTATGCATCAGCCCTCTTTGTCTGGAGATGTTGATCCTAGCGATACACAGTCCTCCGTGCAAAAGATCTTACAGGAGATGATGATGAATAATCAAATGAATGGTCCGACAAGTCTTGTTGGTGTTGGTTCGGTGGTCAATGATATGAAAAGTGTGAATGGGGTCTTACCACCTACAAGCAATATGAGTCTCAACAATGGGAATTTCATTGGAGGGAATGGAACAACCAATGGTGGCTCAGGCATGGGAGGAGGAGGATATGGATCCATGGGGAGTGGGCTTGGGCAGCCTACCATGGTTAATGGAATGAGGAATGCGATGGGAAATAACTCCATTATGAACCGACGAATAGGCATGGCGTCGCTCGCTCTAGAACAAAGCATGAACGGTCAATCGCAGGATTTGGGAAACCAGATTCTAAGTGGACTAGGTGCTGTAAACGGCTTCAGCAATCTCCAATTTGACTTTAAGCCATCCCCATGA | 2784 | 44.86 | MVTSGPPTPMGGGGQSVSPALLRSNSGLHGVQGGMLPSQAAFSSLVSPRNQFNSMNMLGNMSNASPLLNQSFGNGAPNSGRPCPGSSHPGAEPDSLSGVGNGMSFNNPSSSFVASNMTNPVSSVQGQNPQFSNLSTSQLLSDQQKSQQLEPQNFQHSQQSMEQFSAVQSNQQQQFQAIRGLTGVGPVKLEPQVTGNDQLGSQQQQQHLQTLRNLGQGQVKLESQRLQSLQGLAPVKMEAQQSDQSLFLQQHQQHQQHQHQQHQQHQHQQHQHPHQQQSPQQFLHMSRQSSQAAAAHINLMHQQRILHLQQQQQQHLLKSMPPQRPQLQQHFQQQNLPLRSTIKPGYEPGMCARRLTYYMYHQQNRPEDNNIDFWRKFVNEYYAPHAKKKWCVSMYGSGRQTGVFPQDVWHCEICNRKPGRGFEATAEVLPRLFKIKYESGTIEELLYLDMPREYHNASGQIVLDYAKAIQESVFEQLRVVRDGQLRIVFSPDLKICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQSAIQNASSNLSTPELQNNCNMFVASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIGPMDSLAKFPRRTSSSSGLTNQAQVSDEQQRQQQQQSSTAQHSNNNQSSVQSSAVQLTANNGVASVNNAINQPSTSNSASTIVGLLHQNSMNSRQQNSMANPSNSYGGSSVQIPSPGSSSTIQPSQPNPSTFQPPTPSSSNNLSQPLHTAAKSANQMSAANSPANISMHQPSLSGDVDPSDTQSSVQKILQEMMMNNQMNGPTSLVGVGSVVNDMKSVNGVLPPTSNMSLNNGNFIGGNGTTNGGSGMGGGGYGSMGSGLGQPTMVNGMRNAMGNNSIMNRRIGMASLALEQSMNGQSQDLGNQILSGLGAVNGFSNLQFDFKPSP | 927 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2690762 | 2697846 | - | Sed0013770.1 | Sed03g0450 | 705937 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 694 | 786 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 66 | 168 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 610 | 655 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 270 | 292 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 188 | 208 | - | - | |
Sed03g0450 | 927 | Pfam | LIM-domain binding protein | 354 | 607 | IPR029005 | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 99 | 168 | - | - | |
Sed03g0450 | 927 | PANTHER | LIM DOMAIN-BINDING PROTEIN | 268 | 918 | IPR029005 | GO:0000122(PANTHER)|GO:0005634(PANTHER)|GO:0005667(PANTHER)|GO:0045944(PANTHER) | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 694 | 728 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 194 | 208 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 240 | 292 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 736 | 786 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 66 | 81 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 240 | 257 | - | - | |
Sed03g0450 | 927 | MobiDBLite | consensus disorder prediction | 603 | 655 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0450 | Sed-Chr3:2690762 | Sed11g1320 | Sed-Chr11:28958595 | 0.00E+00 | dispersed | |
Sed03g0449 | Sed-Chr3:2690155 | Sed03g0450 | Sed-Chr3:2690762 | 0.00E+00 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0450 | - | - | - | 0.0 |