Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0477 ATGGCGGATATGGATTTCGTCGAGGGCGTCGGAGAGAGTTCTTCGCCGCCTCCAACCTTCGGCGGCGCCGCCTTCTGCGGCGTCCACGATGTTCGGAACGACGTTTACACTCGCCTGCTCGAGACTGGCCACGAAGAGGCCGTTTCTAACCCTCAATTTCGCGACAACTTGTTTGCTCACTTCAATCGCTTGCCTCCCAGTTACGGACTTGATGTTAACTTGGACAAGGTGGAAGATGTTTTGATACATCAAAATCTTCTTACCCTAGCAAAGGATCCTGAGAAGTGCCCTGTCTACCACATTCGCTTTCTGGAGCACATAAGTACTTTATCAGATGGCAATGATGATCAGGAACTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATAGAAGGCTTCCCCTGTCACACAAGAGAACTAGAGGCAATATTATTGACTTTGAGCCTTGTTCCAAGCTTGAAGACTTAAATTTGGATGTTAGAAAGAACTCAAAGGCCATAAATGGGAGATATCATACGGATTCTTTTTCTAAAAGGCAGGGTATTTCACATGTTCTGATTCATGAAGTGGTATTTTCAACTGTTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTGTTTTCAACATCTGATGGCTACTCTTTGGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGAAACTGATGGCTTGTACGAAGCAATGGAAAAAGCAGTTGCTAGATATGAGGGGTCGTGGTCTGGTTCTTCACATTCTCATTCAGCAGTCAAGAAAGCATTAGACGCTCAGGCTAAATCAGCAGACTGGGAAATAGATAGACGGTTACTGAAGATAGATGAAAGAATTGCTTCTGGATCTTGCGGTGAATTGTTTCATGGATTATATCTGGGTCAAGATGTAGCTGTCAAGATATTAAGATCGGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTAAGGAAGGTCCAGCATAAAAACGTAGTTCGTTTTATAGGTGCATGTACAAACTCTCCACATTTGTGTATAGTAACAGAATATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTAAAGCTCCCACAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGCATACTTGCATTTAAATAACATTATTCATAGAGACTTGAAGACAGCAAATCTGCTAATGAACACTGAACATGTTGTAAAGGTGGCAGATTTTGGGGTAGCGCGATTTCAGAGCCAAGGAGTAATGACAGCCGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCGTATGATCAGAAAGCAGATATTTTCAGTTTTGCAATTGTGCTGTGGGAACTAGTAACAGCCAAGGTTCCTTATGATTCCATGACGCCGCTACAAGCTGCACTAGGAGTAAGACAGGGACTACGTCCAGATCTCCCCCAAAACGTGCACCCGAAATTGTTGGATTTGATGCAAAGATGTTGGGATGTAGATCCAGTAAATCGGCCTCCATTCACTGAGATAAAGGCTGAACTCGAAAAACTCCTCGAAGAAGTTGAGGCTTAG 1650 42.85 MADMDFVEGVGESSSPPPTFGGAAFCGVHDVRNDVYTRLLETGHEEAVSNPQFRDNLFAHFNRLPPSYGLDVNLDKVEDVLIHQNLLTLAKDPEKCPVYHIRFLEHISTLSDGNDDQELDSILLSGSSNEAADRRLPLSHKRTRGNIIDFEPCSKLEDLNLDVRKNSKAINGRYHTDSFSKRQGISHVLIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVEETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQAKSADWEIDRRLLKIDERIASGSCGELFHGLYLGQDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTEYMPGGSLYDYLHKNHCVLKLPQLLKFAIDVCEGMAYLHLNNIIHRDLKTANLLMNTEHVVKVADFGVARFQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPQNVHPKLLDLMQRCWDVDPVNRPPFTEIKAELEKLLEEVEA 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2890524 2903098 - Sed0017539.1 Sed03g0477 705964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0477 549 ProSiteProfiles Protein kinase domain profile. 293 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 SMART serkin_6 293 544 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 Pfam Protein tyrosine and serine/threonine kinase 293 540 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 SUPERFAMILY Protein kinase-like (PK-like) 282 543 IPR011009 -
Sed03g0477 549 Gene3D Transferase(Phosphotransferase) domain 1 371 549 - -
Sed03g0477 549 FunFam Serine/threonine-protein kinase isoform 1 283 371 - -
Sed03g0477 549 PRINTS Tyrosine kinase catalytic domain signature 367 380 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 PRINTS Tyrosine kinase catalytic domain signature 511 533 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 PRINTS Tyrosine kinase catalytic domain signature 404 422 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 PRINTS Tyrosine kinase catalytic domain signature 468 490 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 PRINTS Tyrosine kinase catalytic domain signature 449 459 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 ProSiteProfiles ACT domain profile. 192 266 IPR002912 -
Sed03g0477 549 SUPERFAMILY ACT-like 191 262 IPR045865 -
Sed03g0477 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 410 422 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0477 549 CDD STKc_MAP3K-like 299 536 - -
Sed03g0477 549 PANTHER SERINE-THREONINE PROTEIN KINASE 232 544 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed03g0477 549 Gene3D Phosphorylase Kinase; domain 1 280 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0477 Sed-Chr3:2890524 Sed04g3824 Sed-Chr4:46695465 3.00E-143 dispersed
Sed13g2017 Sed-Chr13:25075791 Sed03g0477 Sed-Chr3:2890524 7.40E-13 dispersed
Sed03g0477 Sed-Chr3:2890524 Sed03g0478 Sed-Chr3:2890524 1.80E-260 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78861 PF07714 PK_Tyr_Ser-Thr 5.60E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0477 - - - 0.0