Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed03g0478 | ATGCACATAAGTACTTTATCAGATGGCAATGATGATCAGGAACTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATAGAAGGCTTCCCCTGTCACACAAGAGAACTAGAGGCAATATTATTGACTTTGAGCCTTGTTCCAAGCTTGAAGACTTAAATTTGGATGTTAGAAAGAACTCAAAGGCCATAAATGGGAGATATCATACGGATTCTTTTTCTAAAAGGCAGGGTATTTCACATGTTCTGATTCATGAAGTGGTATTTTCAACTGTTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTGTTTTCAACATCTGATGGCTACTCTTTGGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGAAACTGATGGCTTGTACGAAGCAATGGAAAAAGCAGTTGCTAGATATGAGGGGTCGTGGTCTGGTTCTTCACATTCTCATTCAGCAGTCAAGAAAGCATTAGACGCTCAGGCTAAATCAGCAGACTGGGAAATAGATAGACGGTTACTGAAGATAGATGAAAGAATTGCTTCTGGATCTTGCGGTGAATTGTTTCATGGATTATATCTGGGTCAAGATGTAGCTGTCAAGATATTAAGATCGGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTAAGGAAGGTCCAGCATAAAAACGTAGTTCGTTTTATAGGTGCATGTACAAACTCTCCACATTTGTGTATAGTAACAGAATATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTAAAGCTCCCACAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGCATACTTGCATTTAAATAACATTATTCATAGAGACTTGAAGACAGCAAATCTGCTAATGAACACTGAACATGTTGTAAAGGTGGCAGATTTTGGGGTAGCGCGATTTCAGAGCCAAGGAGTAATGACAGCCGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCGTATGATCAGAAAGCAGATATTTTCAGTTTTGCAATTGTGCTGTGGGAACTAGTAACAGCCAAGGTTCCTTATGATTCCATGACGCCGCTACAAGCTGCACTAGGAGTAAGACAGGGACTACGTCCAGATCTCCCCCAAAACGTGCACCCGAAATTGTTGGATTTGATGCAAAGATGTTGGGATGTAGATCCAGTAAATCGGCCTCCATTCACTGAGATAAAGGCTGAACTCGAAAAACTCCTCGAAGAAGTTGAGGCTTAG | 1338 | 40.51 | MHISTLSDGNDDQELDSILLSGSSNEAADRRLPLSHKRTRGNIIDFEPCSKLEDLNLDVRKNSKAINGRYHTDSFSKRQGISHVLIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVEETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQAKSADWEIDRRLLKIDERIASGSCGELFHGLYLGQDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTEYMPGGSLYDYLHKNHCVLKLPQLLKFAIDVCEGMAYLHLNNIIHRDLKTANLLMNTEHVVKVADFGVARFQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPQNVHPKLLDLMQRCWDVDPVNRPPFTEIKAELEKLLEEVEA | 445 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 2890524 | 2900665 | - | Sed0017539.2 | Sed03g0478 | 705965 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed03g0478 | 445 | SMART | serkin_6 | 189 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | ProSiteProfiles | Protein kinase domain profile. | 189 | 440 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | PRINTS | Tyrosine kinase catalytic domain signature | 263 | 276 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | PRINTS | Tyrosine kinase catalytic domain signature | 300 | 318 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | PRINTS | Tyrosine kinase catalytic domain signature | 345 | 355 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | PRINTS | Tyrosine kinase catalytic domain signature | 364 | 386 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | PRINTS | Tyrosine kinase catalytic domain signature | 407 | 429 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | CDD | STKc_MAP3K-like | 195 | 432 | - | - | |
Sed03g0478 | 445 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 306 | 318 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | ProSiteProfiles | ACT domain profile. | 88 | 162 | IPR002912 | - | |
Sed03g0478 | 445 | Pfam | Protein tyrosine and serine/threonine kinase | 189 | 436 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Sed03g0478 | 445 | Gene3D | Phosphorylase Kinase; domain 1 | 176 | 266 | - | - | |
Sed03g0478 | 445 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 161 | 440 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Sed03g0478 | 445 | SUPERFAMILY | ACT-like | 87 | 158 | IPR045865 | - | |
Sed03g0478 | 445 | FunFam | Serine/threonine-protein kinase isoform 1 | 179 | 267 | - | - | |
Sed03g0478 | 445 | Gene3D | Transferase(Phosphotransferase) domain 1 | 267 | 445 | - | - | |
Sed03g0478 | 445 | SUPERFAMILY | Protein kinase-like (PK-like) | 178 | 439 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g0478 | Sed-Chr3:2890524 | Sed04g3824 | Sed-Chr4:46695465 | 1.80E-122 | dispersed | |
Sed03g0477 | Sed-Chr3:2890524 | Sed03g0478 | Sed-Chr3:2890524 | 1.80E-260 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
78862 | PF07714 | PK_Tyr_Ser-Thr | 3.30E-71 | CL0016 | Sed | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed03g0478 | - | - | - | 0.0 |