Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0478 ATGCACATAAGTACTTTATCAGATGGCAATGATGATCAGGAACTTGATAGTATTCTTTTAAGTGGTTCATCTAATGAAGCAGCTGATAGAAGGCTTCCCCTGTCACACAAGAGAACTAGAGGCAATATTATTGACTTTGAGCCTTGTTCCAAGCTTGAAGACTTAAATTTGGATGTTAGAAAGAACTCAAAGGCCATAAATGGGAGATATCATACGGATTCTTTTTCTAAAAGGCAGGGTATTTCACATGTTCTGATTCATGAAGTGGTATTTTCAACTGTTGACAAGCCAAAGCTTCTTAGCCAGCTTTCTGCTTTGCTTTCTGATATAGGACTTAACATTCGAGAAGCACATGTGTTTTCAACATCTGATGGCTACTCTTTGGATGTATTTGTGGTGGATGGATGGCCTGTTGAGGAAACTGATGGCTTGTACGAAGCAATGGAAAAAGCAGTTGCTAGATATGAGGGGTCGTGGTCTGGTTCTTCACATTCTCATTCAGCAGTCAAGAAAGCATTAGACGCTCAGGCTAAATCAGCAGACTGGGAAATAGATAGACGGTTACTGAAGATAGATGAAAGAATTGCTTCTGGATCTTGCGGTGAATTGTTTCATGGATTATATCTGGGTCAAGATGTAGCTGTCAAGATATTAAGATCGGAAGATCTAAATGATGATTTAGAGGATGAATTCAATCAAGAAGTGGCAATTCTAAGGAAGGTCCAGCATAAAAACGTAGTTCGTTTTATAGGTGCATGTACAAACTCTCCACATTTGTGTATAGTAACAGAATATATGCCAGGAGGGAGTCTTTATGATTACTTGCACAAGAATCATTGCGTGTTAAAGCTCCCACAACTGCTGAAGTTTGCTATTGATGTTTGTGAAGGAATGGCATACTTGCATTTAAATAACATTATTCATAGAGACTTGAAGACAGCAAATCTGCTAATGAACACTGAACATGTTGTAAAGGTGGCAGATTTTGGGGTAGCGCGATTTCAGAGCCAAGGAGTAATGACAGCCGAAACTGGAACATACAGATGGATGGCACCTGAGGTAATAAATCATCTGCCGTATGATCAGAAAGCAGATATTTTCAGTTTTGCAATTGTGCTGTGGGAACTAGTAACAGCCAAGGTTCCTTATGATTCCATGACGCCGCTACAAGCTGCACTAGGAGTAAGACAGGGACTACGTCCAGATCTCCCCCAAAACGTGCACCCGAAATTGTTGGATTTGATGCAAAGATGTTGGGATGTAGATCCAGTAAATCGGCCTCCATTCACTGAGATAAAGGCTGAACTCGAAAAACTCCTCGAAGAAGTTGAGGCTTAG 1338 40.51 MHISTLSDGNDDQELDSILLSGSSNEAADRRLPLSHKRTRGNIIDFEPCSKLEDLNLDVRKNSKAINGRYHTDSFSKRQGISHVLIHEVVFSTVDKPKLLSQLSALLSDIGLNIREAHVFSTSDGYSLDVFVVDGWPVEETDGLYEAMEKAVARYEGSWSGSSHSHSAVKKALDAQAKSADWEIDRRLLKIDERIASGSCGELFHGLYLGQDVAVKILRSEDLNDDLEDEFNQEVAILRKVQHKNVVRFIGACTNSPHLCIVTEYMPGGSLYDYLHKNHCVLKLPQLLKFAIDVCEGMAYLHLNNIIHRDLKTANLLMNTEHVVKVADFGVARFQSQGVMTAETGTYRWMAPEVINHLPYDQKADIFSFAIVLWELVTAKVPYDSMTPLQAALGVRQGLRPDLPQNVHPKLLDLMQRCWDVDPVNRPPFTEIKAELEKLLEEVEA 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2890524 2900665 - Sed0017539.2 Sed03g0478 705965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0478 445 SMART serkin_6 189 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 ProSiteProfiles Protein kinase domain profile. 189 440 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 PRINTS Tyrosine kinase catalytic domain signature 263 276 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 PRINTS Tyrosine kinase catalytic domain signature 300 318 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 PRINTS Tyrosine kinase catalytic domain signature 345 355 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 PRINTS Tyrosine kinase catalytic domain signature 364 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 PRINTS Tyrosine kinase catalytic domain signature 407 429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 CDD STKc_MAP3K-like 195 432 - -
Sed03g0478 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 306 318 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 ProSiteProfiles ACT domain profile. 88 162 IPR002912 -
Sed03g0478 445 Pfam Protein tyrosine and serine/threonine kinase 189 436 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0478 445 Gene3D Phosphorylase Kinase; domain 1 176 266 - -
Sed03g0478 445 PANTHER SERINE-THREONINE PROTEIN KINASE 161 440 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed03g0478 445 SUPERFAMILY ACT-like 87 158 IPR045865 -
Sed03g0478 445 FunFam Serine/threonine-protein kinase isoform 1 179 267 - -
Sed03g0478 445 Gene3D Transferase(Phosphotransferase) domain 1 267 445 - -
Sed03g0478 445 SUPERFAMILY Protein kinase-like (PK-like) 178 439 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0478 Sed-Chr3:2890524 Sed04g3824 Sed-Chr4:46695465 1.80E-122 dispersed
Sed03g0477 Sed-Chr3:2890524 Sed03g0478 Sed-Chr3:2890524 1.80E-260 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78862 PF07714 PK_Tyr_Ser-Thr 3.30E-71 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0478 - - - 0.0