Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0480 ATGGAGCCAAATAATTTCAATCTCAATAATTTGGAGCAACAATCGGGGTTGGAGATTCAAACCAAGGAATTCGACTACTCCAAACGCGCACAATGGTTACGTGCTGCCGTGCTTGGTGCGAACGATGGCCTCGTCTCGACTGCGTCACTCATGATGGGAGTCGGGGCCGTAAAACAAGATATAAAGGCCATGATCCTCACTGGCTTTGCCGGGTTGGTCGCGGGTGCATGTAGTATGGCCATCGGTGAGTTCGTGTCCGTTTACTCGCAATTGGACATCGAAGTGGCTCAAATGAAGAGATCACAAAAGTTACAAAAGAGTAATATGCAAGAAGGGCAAGGCCAAAGCCAAGAAAGGAAAGATGAAGAGAAACTACCCAATCCATTCCAAGCCGCGGCGGCCTCGGCCTTGGCTTTCTCTCTCGGAGCAATGGTGCCGTTGTTGGCTGCTTCGTTTATACGAGAGTACAAGGTAAGGCTTGCGGTGGTCATGGCATCAGTGACGTTGGCTCTCGTCGTGTTTGGGTGGCTAGGTGCCGTCCTCGGGAAAGCATCGCCGATCAAATCAGTCATACGAGTGTTGTTCGGAGGTTGGCTAGCCATGGCCATAACCTTCGGACTAACAAAGCTAATGGGAACAAGTGGACTATAG 651 50.38 MEPNNFNLNNLEQQSGLEIQTKEFDYSKRAQWLRAAVLGANDGLVSTASLMMGVGAVKQDIKAMILTGFAGLVAGACSMAIGEFVSVYSQLDIEVAQMKRSQKLQKSNMQEGQGQSQERKDEEKLPNPFQAAAASALAFSLGAMVPLLAASFIREYKVRLAVVMASVTLALVVFGWLGAVLGKASPIKSVIRVLFGGWLAMAITFGLTKLMGTSGL 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2927380 2928445 + Sed0007411.1 Sed03g0480 705967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0480 216 Pfam VIT family 33 111 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Sed03g0480 216 Pfam VIT family 109 208 IPR008217 GO:0005384(InterPro)|GO:0030026(InterPro)
Sed03g0480 216 MobiDBLite consensus disorder prediction 104 125 - -
Sed03g0480 216 CDD Nodulin-21 31 185 - -
Sed03g0480 216 PANTHER FE(2+)/MN(2+) TRANSPORTER PCL1 10 212 IPR008217 GO:0005381(PANTHER)|GO:0005384(PANTHER)|GO:0005384(InterPro)|GO:0006880(PANTHER)|GO:0016020(PANTHER)|GO:0030026(PANTHER)|GO:0030026(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed06g0346 Sed-Chr6:3124787 Sed03g0480 Sed-Chr3:2927380 3.80E-59 transposed
Sed07g2863 Sed-Chr7:43367755 Sed03g0480 Sed-Chr3:2927380 7.80E-71 transposed
Sed11g1346 Sed-Chr11:29523951 Sed03g0480 Sed-Chr3:2927380 4.40E-87 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0480 K22736 - csv:116402413 347.051