Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0484 ATGTCATTCCGAAGCATACTTCGTGATGTGAGGGATGGATTTGGAAGCTTATCGAGGCGTAGTTTTGAGCTGAGGCTTTCTGGCCATTCCAGAGGTAAATCTCATGGACCAGTTCATGAGTTTCATGATGAACCTCTGCTAATTCAGACCAGCCGATGGGCTAGCCTTCCACCTGAGTTATTATGTGATGTGGTACGGAGACTGGAGGCAAGTGAGAATACTTGGCCTTCTCGGAGAAATGTTGTTGTTTGTGCTGCTGTATGTAGGTCATGGAGGGACATGTGCAAGGAAATCGTCAAAAGTCCCGAGTTCTCCGGGAAGATTACCTTTCCCATCGCCTTGAAGCAGCCTGGGTGGCGTGATGGTACAATCCAATGTTTTATCAAGAGGAACAAATCTAATTTAACTTATCATCTTTATCTTTGCCTTAGTCCTGCTTTACTTGTTGAGAATGGAAAATTTCTTCTTTCCGCAGAAAGAAGGAGGAGAACTACTTCTACAGAGTATGTTATATCATTGGCTGCGGACGATATATCAAGATCGTGCAATGGTTATATAGGAAAGCTAAGATCAAATTTTCTGGGAACCAAGTTCATCATATATGATACACAGCCTCCTTACAACAGCAACCAAATTCCAACCCTCGGGCGAAGCCGAAGATTCTACTCCAAGAAGGTCTCCCCAAAGGTCCCGGCTGGTAACTACAACATTGCACAAATTGCATACGAGTTGAATGTATTAGGTACAAGGGGGCCCCGGAGGATGCGCTGCACCATGTACTCAATCCCCATTTCATCTCTTGAGCCAGGTTGCTCTGTACCGGGCCAGCCCGCGCTCAATCCTCGCCTCCTTGGAGACTCGTTTCGAAGCATTTCATTCTCCAAGTCAATCGGTCATTCCACTGAGTTCAGCAGTTCCCGCTTCTCCGACGTTGCAGGAATGCTTGCTGATGAAGATCGCGAGGGGAAGGACCGACCCGTGATTCTCCAAAACAAGGCACCAAGATGGCACGAGCAGTTGCAATGTTGGTGTCTCAATTTTCGGGGAAGGGTGACCGTTGCATCTGTAAAGAATTTTCAGCTTATTGCTGCAACCTCACCTGCAGCAGAAGCACCAGTGCGGAATCAGCCACCTCCCCAGCCCGCTCAACCTACCCATTCCGACCACGACAAGATCATTCTTCAGTTTGGAAAGGTCAGTAAGGACATGTTTACGATGGATTATCGATACCCGCTGTCTGCATTCCAGGCTTTTGCTATATGCCTCAGCAGCTTTGACACCAAATTGGCATGTGAATAG 1299 47.34 MSFRSILRDVRDGFGSLSRRSFELRLSGHSRGKSHGPVHEFHDEPLLIQTSRWASLPPELLCDVVRRLEASENTWPSRRNVVVCAAVCRSWRDMCKEIVKSPEFSGKITFPIALKQPGWRDGTIQCFIKRNKSNLTYHLYLCLSPALLVENGKFLLSAERRRRTTSTEYVISLAADDISRSCNGYIGKLRSNFLGTKFIIYDTQPPYNSNQIPTLGRSRRFYSKKVSPKVPAGNYNIAQIAYELNVLGTRGPRRMRCTMYSIPISSLEPGCSVPGQPALNPRLLGDSFRSISFSKSIGHSTEFSSSRFSDVAGMLADEDREGKDRPVILQNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATSPAAEAPVRNQPPPQPAQPTHSDHDKIILQFGKVSKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE 432
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2947476 2951502 + Sed0022014.1 Sed03g0484 705971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0484 432 CDD F-box_AtTLP-like 53 97 - -
Sed03g0484 432 Pfam F-box-like 53 96 IPR001810 GO:0005515(InterPro)
Sed03g0484 432 Gene3D Tubby Protein; Chain A 113 426 IPR025659 -
Sed03g0484 432 Gene3D - 48 101 - -
Sed03g0484 432 SUPERFAMILY F-box domain 49 96 IPR036047 GO:0005515(InterPro)
Sed03g0484 432 PANTHER TUBBY-RELATED 47 431 - -
Sed03g0484 432 MobiDBLite consensus disorder prediction 367 389 - -
Sed03g0484 432 Pfam Tub family 114 427 IPR000007 -
Sed03g0484 432 SUPERFAMILY Tubby C-terminal domain-like 102 432 IPR025659 -
Sed03g0484 432 ProSitePatterns Tub family signature 2. 417 432 IPR018066 -
Sed03g0484 432 ProSitePatterns Tub family signature 1. 347 360 IPR018066 -
Sed03g0484 432 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Sed03g0484 432 PRINTS Tubby superfamily signature 329 346 IPR000007 -
Sed03g0484 432 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Sed03g0484 432 PRINTS Tubby superfamily signature 389 408 IPR000007 -
Sed03g0484 432 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Sed03g0484 432 PRINTS Tubby superfamily signature 410 432 IPR000007 -
Sed03g0484 432 PRINTS Tubby superfamily signature 347 363 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0484 Sed-Chr3:2947476 Sed11g1353 Sed-Chr11:29602629 7.20E-233 dispersed
Sed03g0483 Sed-Chr3:2947252 Sed03g0484 Sed-Chr3:2947476 6.00E-256 tandem
Sed03g0484 Sed-Chr3:2947476 Sed03g0485 Sed-Chr3:2948650 6.00E-256 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37741 PF01167 Tub 1.20E-112 CL0395 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0484 K19600 - csv:101203074 804.283