Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0512 ATGGAAGGAGAAATGGTTAGGTTTCTTAAACGGTGTTTACTGTACCTTATCGCTATGTGTTTAAGCTTAACAATGGAGGATTCATTAGTTTCTTCTCTATCTCCTGATGGTGAAGCTCTTCTTTCTCTTATTTCTGCAACTTCGTCTTCCCCTGTTCTTGCTTCTTGGAATCCATCAAGCCAAAACCCTTGTTCTTGGGAAGGAATCACTTGTTCTCCTCAGAACAGAGTGATTTCACTTTCTATTCCAAATGTGTTCTTAAACCTATCTTTGTTGCCTCCTGATTTTTCTTCTCTATCTTCTTTGCAACTTCTTAATCTCTCATCCACTAATGTATCTGGTTCAATCCCTTCTTCTTTTGGCCTGTTTACTCATCTTCGTTTGTTGGATTTATCGTCTAATAATCTCTATGGCCCAATTCCTCCTCAGCTTGGCTCTCTTTCTTCACTTCAATTCCTTTTCCTGAATTCCAATAGACTTTCTGGTAAGATTCCTCCTCAGCTTGCTAATTTGACTAATCTTCAAACTCTTTGCCTCCAAGACAATCTGTTTAATGGCTCCATACCATCACAGTTTGGTTCCTTGTTGTCCCTCCAAGACTTTCGAATCGGAGGGAACCCGTATGTTTCTGGAGAGATTCCATCTCAGATAGGGATGCTTACTAATCTCACTGCGTTCGGGGCAGCCGCTACTGCCATTTCGGGGGCCATACCGTCTACATTTGGGAACTTGATTAACCTACAAACTTTGTCACTCTATGATACTGAGATTTCTGGTTCAATACCTTCTGAGCTGGGACTTTGTTCTGAGCTAAGGGATTTGTATTTACACATGAACAAGCTCAACGGTTATATTCCTCCTCAGCTGGGTAGGTTGCAGAAGCTTACTAGTTTGTTTCTATGGGGTAATGCTCTATCAGGAGCGATACCGTTTGAGATTTCGAATTGTTCGGCTCTTGTTGTTTTTGATGCTTCAGATAATGATCTTTCTGGTGAAATCCCTAGTGATTTAGGGAAGTTAGTGCTTCTTGAACAGTTTCATGTATCAAACAATTCAATCTCGGGTTCGATACCATGGCAGTTGGGCAACTGCACAAGCTTAACTGCCCTTCAGCTGGACAATAATCAATTATCAGGCGTGATTCCACCACAACTTGGCAATTTGAAATCCCTGCAAAGTTTTTTCTTATGGGACAATTCTGTATCAGGAACCATACCATCTTCATTTGGCAACTGTACTGAGTTATATGCCCTTGATCTTTCAAGAAACAAACTCACTGGGATAATCCCAAAAGAAATTCTCAACTTGAAGAAGTTGAGCAAGCTTTTACTCCTAGGAAATTCTTTTTCTGGCGAGTTGCCACGAAGTATTGCGAATTGTCAATCATTGGTGAGGTTGAGGCTGGGAGAAAACCAGCTTTCTGGTCAGATTCCGAAGGAGGTAGGTCAGTTGCAAAATCTCATCTTTCTCGATTTGTATATGAATCATTTTTCGGGTGGTCTTCCATCTGAGATTGCTAATATTACAGCTCTTGAGCTACTTGATGTGCATAATAATTATATAACCGGGGAAATTCCCCCTCAAATTGGGGAATTGGTGAACTTGGAGCAGCTTGATCTCAGTCGGAACAGCTTCACTGGTGCAATTCCGGATAGCTTTGGAAACTTCAGTTATTTGAATAAACTTATTCTCAACAACAATCTACTTACAGGGTCAATTCCAAAGTCCATAAAAAACCTGGAGAGACTAACTCTACTTGATTTGAGTTACAACAGTCTCTCTGGCACTATACCACCGGAAATTGGTTATATTAAGAGCTTGTCGATCAGTCTGGACTTGAGCTCGAACGGGTTAATTGGAGCAATTCCTGAGACAATGTTCAGTTTGACACAGTTACAATCACTTGATCTTTCCCATAACAGGCTTTGTGGAAACATTAAAGTGTTGGGACTCTTGACTAGTCTCACTTCTCTCAATATCTCATTCAACAACTTCTCAGGGCCTATGCCTGTAACACCGTTTTTTAGAACCCTATCACGAGATGCATATTATCAGAACTGGGATCTTTGTGAATCACTTAATGGGCTTACTTGTTCCTCGAGTTCAATGCGAAGAAACGGCTTAAAGCCTGCAAAAACTGCTGCTTTAATCATCACCATTCTTGCTGCAGTTATCGTGATAGTTTTTGCATTGTGGATGGTAGTTTCAAGAAATCGTAAGTATATGGCAGAAAAACATTCCGAGACATTGTCCGGTGCATCGGCTGCTGACGATTTCTCTTATCCATGGACCTTTATCCCGTTTCAGAAGCTCAATTTTACCATAGATAGCATCTTGGAGTCCATGAAAGATGAAAATATCATTGGAAAAGGTTGTTCAGGCGTTGTTTATAAAGCCGATATGCCAAATGGTGAATTAGTTGCTGTGAAGAAACTGTGGAAAACAAAGCAAGAAGAAGAAGCGGTTGACTCGTGCGCTGCAGAGATCCAAATTCTTGGGCATATACGGCATCGTAACATAGTGAAGCTCATAGGTTATTGTTCCAATAAATGTGTCAAGCTACTTCTCTACAACTACATTTCAAATGGTAATCTACAGCAACTCTTGCAAGGAAACAGGAACTTGGACTGGGAGACTAGGTACAAGATTGCGATCGGAACGGCTCAGGGTTTGGCTTATCTTCATCATGATTGTGTTCCTGCAATTCTTCACAGAGATGTCAAGTGCAACAACATACTTCTGGACTCAAAGTTTGAAGCTTATCTAGCAGATTTTGGCCTGGCAAAGTTGATGAACACTCCAAATTATCACCATGCAATTTCGAGAATAGCTGGGTCCTATGGTTATATTGCCCCAGAGTATGGATATACCATGAACATAACCGAGAAGAGTGATGTCTATAGCTATGGAGTTGTTCTGCTAGAGATACTAAGCGGTCGTAGTGCAATCGAGACACAGAATGGAGACGGTCTTCACATTGTGGAGTGGGTGAAGAGAAAGGTGGCAAGCTTCAACTTCGAACCTGCCATATCGATACTCGATGCAAATCTCCGGGGTTTATCAGATCAGGTGGTGCACGAAATGCTACAAACACTTGGAATAGCAATGTTTTGTGTGAACTCATCTCCAGCAGAAAGGCCAACAATGAAGGAAGTGGTAGCATTGTTGATGGAGGTGAAGAATCCTTCAGAAGAATGGGGCAAAACCTCTCAACCTATAATAAAGCAGTCCTCAAATTTAAGGTGA 3246 41.25 MEGEMVRFLKRCLLYLIAMCLSLTMEDSLVSSLSPDGEALLSLISATSSSPVLASWNPSSQNPCSWEGITCSPQNRVISLSIPNVFLNLSLLPPDFSSLSSLQLLNLSSTNVSGSIPSSFGLFTHLRLLDLSSNNLYGPIPPQLGSLSSLQFLFLNSNRLSGKIPPQLANLTNLQTLCLQDNLFNGSIPSQFGSLLSLQDFRIGGNPYVSGEIPSQIGMLTNLTAFGAAATAISGAIPSTFGNLINLQTLSLYDTEISGSIPSELGLCSELRDLYLHMNKLNGYIPPQLGRLQKLTSLFLWGNALSGAIPFEISNCSALVVFDASDNDLSGEIPSDLGKLVLLEQFHVSNNSISGSIPWQLGNCTSLTALQLDNNQLSGVIPPQLGNLKSLQSFFLWDNSVSGTIPSSFGNCTELYALDLSRNKLTGIIPKEILNLKKLSKLLLLGNSFSGELPRSIANCQSLVRLRLGENQLSGQIPKEVGQLQNLIFLDLYMNHFSGGLPSEIANITALELLDVHNNYITGEIPPQIGELVNLEQLDLSRNSFTGAIPDSFGNFSYLNKLILNNNLLTGSIPKSIKNLERLTLLDLSYNSLSGTIPPEIGYIKSLSISLDLSSNGLIGAIPETMFSLTQLQSLDLSHNRLCGNIKVLGLLTSLTSLNISFNNFSGPMPVTPFFRTLSRDAYYQNWDLCESLNGLTCSSSSMRRNGLKPAKTAALIITILAAVIVIVFALWMVVSRNRKYMAEKHSETLSGASAADDFSYPWTFIPFQKLNFTIDSILESMKDENIIGKGCSGVVYKADMPNGELVAVKKLWKTKQEEEAVDSCAAEIQILGHIRHRNIVKLIGYCSNKCVKLLLYNYISNGNLQQLLQGNRNLDWETRYKIAIGTAQGLAYLHHDCVPAILHRDVKCNNILLDSKFEAYLADFGLAKLMNTPNYHHAISRIAGSYGYIAPEYGYTMNITEKSDVYSYGVVLLEILSGRSAIETQNGDGLHIVEWVKRKVASFNFEPAISILDANLRGLSDQVVHEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKNPSEEWGKTSQPIIKQSSNLR 1081
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3112160 3116297 + Sed0008690.1 Sed03g0512 705999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0512 1081 SMART serkin_6 782 1060 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0512 1081 PRINTS Leucine-rich repeat signature 583 596 - -
Sed03g0512 1081 PRINTS Leucine-rich repeat signature 629 642 - -
Sed03g0512 1081 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 427 702 - -
Sed03g0512 1081 ProSitePatterns Serine/Threonine protein kinases active-site signature. 902 914 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0512 1081 Gene3D Ribonuclease Inhibitor 573 699 IPR032675 -
Sed03g0512 1081 ProSiteProfiles Leucine-rich repeat profile. 631 653 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 ProSitePatterns Protein kinases ATP-binding region signature. 788 811 IPR017441 GO:0005524(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 511 532 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 101 121 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 319 340 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 173 195 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 486 507 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 149 171 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 343 364 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 631 646 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 366 388 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine Rich Repeat 246 266 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 SMART LRR_typ_2 171 195 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 629 654 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 99 122 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 147 170 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 123 146 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 532 555 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 364 388 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 580 604 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 244 268 IPR003591 -
Sed03g0512 1081 SMART LRR_typ_2 292 316 IPR003591 -
Sed03g0512 1081 Gene3D Transferase(Phosphotransferase) domain 1 860 1076 - -
Sed03g0512 1081 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 207 426 - -
Sed03g0512 1081 Gene3D Ribonuclease Inhibitor 479 572 IPR032675 -
Sed03g0512 1081 Gene3D Ribonuclease Inhibitor 379 478 IPR032675 -
Sed03g0512 1081 Pfam Leucine rich repeat 534 593 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 Pfam Leucine rich repeat 390 448 IPR001611 GO:0005515(InterPro)
Sed03g0512 1081 SUPERFAMILY RNI-like 380 679 - -
Sed03g0512 1081 Pfam Protein kinase domain 784 1053 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0512 1081 PANTHER LEUCINE RICH REPEAT KINASE 2 362 1058 IPR051420 -
Sed03g0512 1081 SUPERFAMILY L domain-like 56 402 - -
Sed03g0512 1081 Gene3D Ribonuclease Inhibitor 90 229 IPR032675 -
Sed03g0512 1081 Gene3D Ribonuclease Inhibitor 230 378 IPR032675 -
Sed03g0512 1081 FunFam Putative LRR receptor-like serine/threonine-protein kinase 767 859 - -
Sed03g0512 1081 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Sed03g0512 1081 Gene3D Phosphorylase Kinase; domain 1 756 859 - -
Sed03g0512 1081 ProSiteProfiles Protein kinase domain profile. 782 1074 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0512 1081 SUPERFAMILY Protein kinase-like (PK-like) 767 1057 IPR011009 -
Sed03g0512 1081 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 33 191 - -
Sed03g0512 1081 Gene3D Ribonuclease Inhibitor 30 89 IPR032675 -
Sed03g0512 1081 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 860 1073 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0512 Sed-Chr3:3112160 Sed07g2846 Sed-Chr7:43276885 1.70E-105 dispersed
Sed11g1382 Sed-Chr11:29833441 Sed03g0512 Sed-Chr3:3112160 3.90E-219 wgd
Sed03g0512 Sed-Chr3:3112160 Sed07g2816 Sed-Chr7:43006919 1.50E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78863 PF00069 Pkinase 8.90E-46 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0512 - - - 0.0