Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed03g0517 | ATGGCGGCTATATCTCCGACGGCGGTGATCGCCGGTCCAGTTCAACCGGAGGCGATTTCCCCCATGAATGGCTCTGCGGCGGCCGGTGCGGTCGGGTTTATGAGTTCGTCGTTGTATGTCGGCGATCTGGACCAGACTGTGAACGAGGGACAGCTCTTGGAATTGTTCGGCCAAGTGGCTCAGGTTGTTTCAATTAGGGTTTGCAGGGATCAGAATCGCAGGTCGCTTGGTTACGCTTATGTTAATTTTGCTAATCATCAGGACGCTTCGAGCGCCTTGGAACATTTGAATTTCTCCCCAATTAATGGGAAGCCTATCAGGATTATGATGTCTAATCGAGATCCTAGCAATCGAAAAAGTGGATATGGAAATGTTTTTATAAAAAATCTGGACAGATCGATCGATAACAAGGCTTTGCATGATACTTTTGCTTCCTTTGGTACTGTTCTTTCTTGTAAAGTTGCTCTTGATAGCAATGGTCAGTCAAAAGGTTATGGATTTGTGCAATATGAAAATGAGGAAGCAGCCGAGAATGCTATAATTAGACTGAATGGCATGCTGCTCAATGATAAGCAAGTTTATGTCGGACATTTTATTCGACATCAGGAAAGGGCTCGAGCACATGAAATGTTGTTTACTAATGTTTATGTGAAGAACTTACCAGACACTACCACAGATGATGATCTAAGAAATCTTTTTACCAGACATGGTGCCATTACTAGTGCAGTTGTTATGAGAGATTCAAATGGGGAGTCCAGATGCTTTGGTTTTGTGAACTTTGAGAATGCTGGCTCTGCTGCAGCTGCAGTTGAAAAGTTTAATGGTATGATCCTTGGTGATGACAAGGTTCTATATGTAGGCCGGGCTCAGAGGAAATCCGAAAGGGAGGCCGAGTTGAAAGCAAAATTTGAACAGGAAAGAAGGAGTAGGTTTGAAAAATTACAAGGTGCCAATTTGTATATCAAAAATCTTGATGACCATATTGATGATGAGAAGCTCAAAGAGCTATTCTCTGAATTTGGAACAATCACATCATGCAAGGTTATGCTAGACCAACATGGACTGAGCAAGGGGTCTGGTTTTGTAGCCTTTTCTTCACCAGATGAAGCAACAAGAGCCTTAAATGAAATGAATGGAAAGATGAAAGGAAGGAAACCTCTATATGTGGCTGTTGCCCAGCGTAAGGACGAGAGAAAGGCCCGTCTACAGGCACAATTTTCTCAAATTCGACCAGCTGGCGGAATGTCATCTTTGCCTTCAGGAATTCCAGGATTTCATCAAGGAGCACCACGACTCGGACCTCAACAGATGTACTATGGTCAGGGGAACCCGGGGCTGGTGTCCCCACAACCTACCGGATATGGCTTCCAGCCTCAACTCATGACTGGAATGCGACCTGGTATGGGCCCGAACTATATCATGCCTTACCAATTTCAGAGGCAAGGACAGCCTAGGGCAGTGTCGGGGATGAGGCGGGGTGGAAATTCACAGCCAATTCAGCAGCAACAGGTACTGCTCCGTGGCTCTGGACAAGGTTTTCGATATTTGAACAATGCACGAAATGGATTAGAGCCATCAGTCCTGCCACAAGGTCTTGTTGGTCCAATGATGCCTTTGGCTTTTGATAGTTCTGGAGTTTCAAGCTCCCCTATTGACAACCAGCGATCAAGGGTCGTGCCTTCTTCAACGCTTGCTTCTGCATTAGCTTCCGCTACACTCGAAAATCAGCGTTTGATGCTTGGCGAGCAACTGTATCCACTCGTGGAACGTCTCGAGTCCGGGCATGCAGCAAAGGTTACTGGAATGTTGTTGGAAATGGACCAAACAGAGGTCCTTCATCTCATCGAGTCGCCGGATGACTTGAAGAGTAAGGTGGCAGAGGCAATGCAAGTCCTCCACAAAGCCTCGTCGGAACCGGAGCTCTCTGATCAGCTAGGTGCATTGGCCCTAACCAAGTGA | 1959 | 46.35 | MAAISPTAVIAGPVQPEAISPMNGSAAAGAVGFMSSSLYVGDLDQTVNEGQLLELFGQVAQVVSIRVCRDQNRRSLGYAYVNFANHQDASSALEHLNFSPINGKPIRIMMSNRDPSNRKSGYGNVFIKNLDRSIDNKALHDTFASFGTVLSCKVALDSNGQSKGYGFVQYENEEAAENAIIRLNGMLLNDKQVYVGHFIRHQERARAHEMLFTNVYVKNLPDTTTDDDLRNLFTRHGAITSAVVMRDSNGESRCFGFVNFENAGSAAAAVEKFNGMILGDDKVLYVGRAQRKSEREAELKAKFEQERRSRFEKLQGANLYIKNLDDHIDDEKLKELFSEFGTITSCKVMLDQHGLSKGSGFVAFSSPDEATRALNEMNGKMKGRKPLYVAVAQRKDERKARLQAQFSQIRPAGGMSSLPSGIPGFHQGAPRLGPQQMYYGQGNPGLVSPQPTGYGFQPQLMTGMRPGMGPNYIMPYQFQRQGQPRAVSGMRRGGNSQPIQQQQVLLRGSGQGFRYLNNARNGLEPSVLPQGLVGPMMPLAFDSSGVSSSPIDNQRSRVVPSSTLASALASATLENQRLMLGEQLYPLVERLESGHAAKVTGMLLEMDQTEVLHLIESPDDLKSKVAEAMQVLHKASSEPELSDQLGALALTK | 652 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 3 | 3130994 | 3134807 | - | Sed0008493.1 | Sed03g0517 | 706004 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed03g0517 | 652 | NCBIfam | polyadenylate binding protein, human types 1, 2, 3, 4 family | 36 | 632 | IPR006515 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | FunFam | Polyadenylate-binding protein | 300 | 405 | - | - | |
| Sed03g0517 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 213 | 291 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | Gene3D | - | 200 | 298 | IPR012677 | - | |
| Sed03g0517 | 652 | FunFam | Polyadenylate-binding protein | 16 | 117 | - | - | |
| Sed03g0517 | 652 | Pfam | Poly-adenylate binding protein, unique domain | 567 | 632 | IPR002004 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 213 | 228 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Sed03g0517 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 304 | 321 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Sed03g0517 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 322 | 337 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Sed03g0517 | 652 | PRINTS | Paraneoplastic encephalomyelitis antigen family signature | 337 | 349 | IPR002343 | GO:0003723(InterPro)|GO:1990904(InterPro) | |
| Sed03g0517 | 652 | SUPERFAMILY | RNA-binding domain, RBD | 36 | 201 | IPR035979 | GO:0003676(InterPro) | |
| Sed03g0517 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 123 | 195 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | Gene3D | - | 299 | 403 | IPR012677 | - | |
| Sed03g0517 | 652 | Pfam | RNA recognition motif | 319 | 387 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | Pfam | RNA recognition motif | 38 | 107 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | Pfam | RNA recognition motif | 125 | 193 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | Pfam | RNA recognition motif | 215 | 282 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | CDD | RRM3_I_PABPs | 212 | 292 | - | - | |
| Sed03g0517 | 652 | Gene3D | - | 556 | 637 | - | - | |
| Sed03g0517 | 652 | SMART | rrm2_1 | 37 | 109 | IPR003954 | GO:0003676(InterPro) | |
| Sed03g0517 | 652 | SMART | rrm2_1 | 318 | 389 | IPR003954 | GO:0003676(InterPro) | |
| Sed03g0517 | 652 | SMART | rrm2_1 | 124 | 196 | IPR003954 | GO:0003676(InterPro) | |
| Sed03g0517 | 652 | SMART | rrm2_1 | 214 | 286 | IPR003954 | GO:0003676(InterPro) | |
| Sed03g0517 | 652 | FunFam | Polyadenylate-binding protein | 556 | 638 | - | - | |
| Sed03g0517 | 652 | ProSiteProfiles | Poly(A)-binding protein C-terminal (PABC) domain profile. | 560 | 637 | IPR002004 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | Gene3D | - | 31 | 123 | IPR012677 | - | |
| Sed03g0517 | 652 | SMART | poly_2 | 572 | 635 | IPR002004 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | Gene3D | - | 124 | 197 | IPR012677 | - | |
| Sed03g0517 | 652 | FunFam | Polyadenylate-binding protein | 118 | 204 | - | - | |
| Sed03g0517 | 652 | SMART | rrm1_1 | 318 | 390 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | SMART | rrm1_1 | 37 | 109 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | SMART | rrm1_1 | 124 | 196 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | SMART | rrm1_1 | 214 | 287 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 317 | 394 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 36 | 113 | IPR000504 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | SUPERFAMILY | RNA-binding domain, RBD | 213 | 398 | IPR035979 | GO:0003676(InterPro) | |
| Sed03g0517 | 652 | CDD | RRM2_I_PABPs | 121 | 197 | IPR045305 | - | |
| Sed03g0517 | 652 | SUPERFAMILY | PABC (PABP) domain | 468 | 638 | IPR036053 | GO:0003723(InterPro) | |
| Sed03g0517 | 652 | CDD | RRM4_I_PABPs | 316 | 394 | - | - | |
| Sed03g0517 | 652 | PANTHER | RNA BINDING PROTEIN | 23 | 216 | - | GO:0003723(PANTHER)|GO:0003730(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0008143(PANTHER)|GO:0008266(PANTHER)|GO:1990904(PANTHER) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed03g0517 | Sed-Chr3:3130994 | Sed11g1386 | Sed-Chr11:29852935 | 3.00E-299 | dispersed | |
| Sed03g0515 | Sed-Chr3:3124180 | Sed03g0517 | Sed-Chr3:3130994 | 1.60E-07 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed03g0517 | K13126 | - | csv:101219081 | 1050.81 |