Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0534 ATGGGGATTCAAACTATGGGGTCTCAGGCTGGAGGTGATCCAAATGGCAAACAATCACAATTCCAGCCATTGGTTCGTCAAAGCTCGCTGTATAATCTTACACTGGATGAAGTTCAAAATCAGTTGGGTGATCTAGGAAAGCCATTAACCAGCATGAACCTTGATGAGCTTCTTAAGAATGTGTGGACTGCCGAGGCCAACCAAACCGTCGGTAAGGGCAATGAGGACGATACCATCTTGGCCAATCTAACGCCTCAACAGCGTCAGGCTAGTCTTGCATTGAACGATGCTCTGAGTAAAAAGACTGTTGATGAGGTGTGGAGAGACATTCAACAAAGCAAAAACAGTGAGGAGAAGAAGTCTTGTGAGCGACAACCTACCTTGGGAGAGATGACATTGGAAGATTTTCTGGTGAAAGCAGGAGTTGTTGCTGAGACGTCGTCGAATAAAAAAGGTGCAGGTCCTGTTGTTGAAATTGATGCAAATATCACACCCCAGTTTCCCCAACAAGGGCAGTGGATGCAGTACCCCCAAGCTCAATATCAGCCTCAACAAGCAATGATGGGGGGAGTTTTCATGCCGGGCCAGCCTATTCCTCAGCCGCTGCACATGATGGATGTTCCATATGTAGACAACCAGTTGGCATTGCCAGCACCATTGATGGGAGCTTTACCTGACACACAAACACCTGGAAGGAAAAGGGGAGCACCTGAAGACATAATTGAGAAAACTGTCGAGCGTAGACAGAAGAGAATGATAAAGAATCGGGAATCTGCCGCTCGTTCACGAGCGAGGAAGCAGGCTTATACGACTGAACTGGAGAGCAAAGTTTCACGTTTGGAAAAGGAAAATGAAAGTCTCAAGAAACGGAAGAAACTGGAAGAGATGCTACCGTTGGCTACCTCGCCCGAGCCGAAGTATCAGCTTCGAAGAACATCGTCAGCCTCGTTTTAA 954 47.17 MGIQTMGSQAGGDPNGKQSQFQPLVRQSSLYNLTLDEVQNQLGDLGKPLTSMNLDELLKNVWTAEANQTVGKGNEDDTILANLTPQQRQASLALNDALSKKTVDEVWRDIQQSKNSEEKKSCERQPTLGEMTLEDFLVKAGVVAETSSNKKGAGPVVEIDANITPQFPQQGQWMQYPQAQYQPQQAMMGGVFMPGQPIPQPLHMMDVPYVDNQLALPAPLMGALPDTQTPGRKRGAPEDIIEKTVERRQKRMIKNRESAARSRARKQAYTTELESKVSRLEKENESLKKRKKLEEMLPLATSPEPKYQLRRTSSASF 317
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3281815 3288022 + Sed0022838.2 Sed03g0534 706021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0534 317 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 245 297 - -
Sed03g0534 317 SMART brlzneu 243 302 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0534 317 Coils Coil 270 297 - -
Sed03g0534 317 SUPERFAMILY Leucine zipper domain 247 292 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0534 317 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 250 265 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0534 317 MobiDBLite consensus disorder prediction 1 24 - -
Sed03g0534 317 MobiDBLite consensus disorder prediction 248 317 - -
Sed03g0534 317 Pfam bZIP transcription factor 247 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0534 317 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 245 290 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Sed03g0534 317 Gene3D - 245 298 - -
Sed03g0534 317 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 26 315 IPR043452 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0045893(InterPro)
Sed03g0534 317 CDD bZIP_plant_BZIP46 247 293 - -
Sed03g0534 317 MobiDBLite consensus disorder prediction 248 297 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0534 Sed-Chr3:3281815 Sed11g1407 Sed-Chr11:30035602 2.40E-137 dispersed
Sed03g0533 Sed-Chr3:3281815 Sed03g0534 Sed-Chr3:3281815 8.00E-173 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37753 PF00170 bZIP_1 6.30E-14 CL0018 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0534 K14432 - csv:101213915 501.901