Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0538 ATGATGAACACCATGGGAATCTTTGAAGATTTTGGCTTTTGTCCAAATTTTGAATATTTTTCGGCTCCTCCTGAGGAACAAGAGACGGCTCGGGAGCATGAAGCTGATGCTACTTTGGAGGAAGATTATAGTGATGAAGAGATGGATGTTGACGAGCTCGAGAGAAGGATGTGGCGAGACCGATTGCTCTTGAGGCGACTCAAAGAACAAGGCGTAGAGAAGAAGGAAGGGGCTGATAATTCGAAGCAGCGCCAATCCCAGGAGCAGGCTCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGCATCCTGAAATATATGTTGAAAATGATGGAGGTCTGCAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAGGGAAAGCCAGTGAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCTGCAGCCATTGCTAAATATCAGGCTGACCATGCAATTCCTGGGTCGAACGATGACTTCAATACAGTGACCTCCACTCCTCACACTTTACAAGAGCTCCAAGACACGACCCTTGGGTCGCTTCTTTCGGCTCTGATGCAGCACTGTGATCCACCACAGCGGCGTTTTCCTCTTGAGAAGGGCGTTTCCCCACCGTGGTGGCCGAGTGGAAATGAGGAATGGTGGCCAGAATTGGGGCTACCCAAGAACCAGGGGCCTCCCCCATATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAGGTCAGCGTTCTCACGGCTGTGATTAAGCACATGTCGCCCGACATTGCCAAGATTCGCAAGCTTGTCCGTCAGTCTAAATGCTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGCTGGCCATTATAAACCAGGAAGAAACCTTCGCCAGGAAATTGTATCCTGATAAATGCCCGCCTATGTCATCTGGTGGGAGCGGATCGATTCTAATCAGCGACACCAGTGATTACGACGTTGAAGGAGCAGACAATGAACCAAATTTGGAAATAGAAGAAAGCAAGCCTCATGATTTCAATTTCTTTAATATGGGGGAGAGGCTTATGATGTCACCAGTGGGACCACATCAGATCAAGGAAGAACTCATGGAGAACAATTCAGACATTATTCAAAAGAGGAAGCAGATGACTGAGGAGTCGAATACAATGAGGATTCAGAAAGTATATACTTGCGAGTATTCTCCATGTCCGTATAACAGTTCGCGTCTCGGGTTTCTCGACAGGACTTCAAGAAACAACCACCAGTTAAATTGCCCATATAGGAGTGAATCTTCCCATGTATTTGCCATGCCAAGCTTTCAAACCAACAATGATAAGTCATCCCCAGTTCCTCCATCCTTTAATCACTCCAAGCCTCCTACTCAGCCAATGAACCCGACTCCGCCTTACTTGGTTTCAGAACTCGGACTTCCCGAAGATGACCGGAAAATGATCGCTGACCTTCTGAATTTCTACGATTCGAACCATCAACCGGGTAAAAATTTGAACTCCGGGAACGTCGAAGCAAGAGACGATCACAATCAACAGCTCCCACAATTCCAACTCCAAGTAAACAATAACTTGTATCCTCAAGGAGCAATGGTGGGGGAAAACAATAGCATGCCGATGCAGCACCCTGATTTTTCTTCCTCAAAAGCCCCATTCGACGAATTCAAGGCATTTGATTCACCCTTCGACATGTATCCCAACGATAACCTTCCCGACTTCAGATTTAGTTCTCCATTTAACATGACATCAATTGATTATCCTGACACACCATTGCCGAAGCAAGATACACAGTTGTGGTATCTTTGA 1827 46.52 MMNTMGIFEDFGFCPNFEYFSAPPEEQETAREHEADATLEEDYSDEEMDVDELERRMWRDRLLLRRLKEQGVEKKEGADNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGSNDDFNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPSGNEEWWPELGLPKNQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEETFARKLYPDKCPPMSSGGSGSILISDTSDYDVEGADNEPNLEIEESKPHDFNFFNMGERLMMSPVGPHQIKEELMENNSDIIQKRKQMTEESNTMRIQKVYTCEYSPCPYNSSRLGFLDRTSRNNHQLNCPYRSESSHVFAMPSFQTNNDKSSPVPPSFNHSKPPTQPMNPTPPYLVSELGLPEDDRKMIADLLNFYDSNHQPGKNLNSGNVEARDDHNQQLPQFQLQVNNNLYPQGAMVGENNSMPMQHPDFSSSKAPFDEFKAFDSPFDMYPNDNLPDFRFSSPFNMTSIDYPDTPLPKQDTQLWYL 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3311908 3315585 + Sed0007475.1 Sed03g0538 706025

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0538 608 Gene3D - 176 309 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed03g0538 608 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 603 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed03g0538 608 MobiDBLite consensus disorder prediction 72 95 - -
Sed03g0538 608 FunFam Ethylene insensitive 3-like 1 172 309 - -
Sed03g0538 608 SUPERFAMILY DNA-binding domain of EIN3-like 178 302 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed03g0538 608 Coils Coil 36 70 - -
Sed03g0538 608 Coils Coil 370 390 - -
Sed03g0538 608 Pfam Ethylene insensitive 3, DNA-binding domain 51 299 IPR047091 GO:0003700(InterPro)
Sed03g0538 608 FunFam Ethylene insensitive 3-like 1 84 162 - -
Sed03g0538 608 MobiDBLite consensus disorder prediction 24 50 - -
Sed03g0538 608 MobiDBLite consensus disorder prediction 443 470 - -
Sed03g0538 608 Gene3D - 84 164 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0538 K14514 - - csv:101214396 1012.68
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0538 Sed-Chr3:3311908 Sed12g1623 Sed-Chr12:27273232 1.20E-188 dispersed
Sed11g1403 Sed-Chr11:29994556 Sed03g0538 Sed-Chr3:3311908 2.1e-310 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1623 . 2 628 EIL Transcription Factor Family AT2G27050 59.7 3.1e-194 676.0
Sed11g1403 . 1 506 EIL Transcription Factor Family AT2G27050 62.3 1.1e-167 587.8
Sed03g0538 . 8 560 EIL Transcription Factor Family AT2G27050 56.6 1.1e-162 571.2
Sed08g1058 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed08g1059 . 44 326 EIL Transcription Factor Family AT2G27050 63.2 4.2e-95 346.7
Sed12g1593 . 66 322 EIL Transcription Factor Family AT2G27050 63.6 9.2e-90 328.9
Sed07g1748 . 8 295 EIL Transcription Factor Family AT2G27050 52.5 5.9e-81 299.7
Sed08g1058 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed08g1059 . 44 590 EIL Transcription Factor Family AT1G73730 52.1 7.3e-137 485.3
Sed12g1593 . 58 575 EIL Transcription Factor Family AT1G73730 54.6 2.3e-135 480.3
Sed03g0538 . 35 335 EIL Transcription Factor Family AT1G73730 60.3 3.1e-103 373.6
Sed12g1623 . 36 334 EIL Transcription Factor Family AT1G73730 61.6 3.1e-103 373.6
Sed11g1403 . 40 335 EIL Transcription Factor Family AT1G73730 61.3 1.2e-102 371.7
Sed07g1748 . 15 262 EIL Transcription Factor Family AT1G73730 53.9 3.7e-72 270.4
Sed13g0935 . 21 269 EIL Transcription Factor Family AT1G73730 52.0 4.8e-72 270.0
Sed12g1623 . 3 628 EIL Transcription Factor Family AT3G20770 61.5 3.0e-211 732.6
Sed11g1403 . 7 504 EIL Transcription Factor Family AT3G20770 63.2 3.7e-169 592.8
Sed03g0538 . 7 501 EIL Transcription Factor Family AT3G20770 61.9 2.5e-165 580.1
Sed08g1058 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed08g1059 . 44 292 EIL Transcription Factor Family AT3G20770 68.5 9.2e-96 349.0
Sed12g1593 . 66 288 EIL Transcription Factor Family AT3G20770 69.9 4.4e-90 330.1
Sed07g1748 . 8 261 EIL Transcription Factor Family AT3G20770 57.0 6.0e-79 293.1
Sed07g1748 . 7 274 EIL Transcription Factor Family AT5G65100 57.5 9.7e-89 325.5
Sed08g1058 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed08g1059 . 44 288 EIL Transcription Factor Family AT5G65100 51.9 6.3e-72 269.6
Sed12g1593 . 83 284 EIL Transcription Factor Family AT5G65100 60.2 3.5e-70 263.8
Sed13g0935 . 21 359 EIL Transcription Factor Family AT5G10120 54.9 1.9e-98 357.5
Sed07g1748 . 12 324 EIL Transcription Factor Family AT5G10120 56.0 8.4e-94 342.0
Sed08g1058 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed08g1059 . 44 290 EIL Transcription Factor Family AT5G10120 54.9 6.3e-73 272.7
Sed12g1593 . 77 286 EIL Transcription Factor Family AT5G10120 58.0 4.5e-71 266.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001004 3 9 2 2 3 2 4 2 2 1 2 2 4 2 2 4 2 6 4 2 2 2 2 2 2 2 2 3 4 2 83
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37754 PF04873 EIN3 1.10E-130 No_clan Sed TF