Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0538 ATGATGAACACCATGGGAATCTTTGAAGATTTTGGCTTTTGTCCAAATTTTGAATATTTTTCGGCTCCTCCTGAGGAACAAGAGACGGCTCGGGAGCATGAAGCTGATGCTACTTTGGAGGAAGATTATAGTGATGAAGAGATGGATGTTGACGAGCTCGAGAGAAGGATGTGGCGAGACCGATTGCTCTTGAGGCGACTCAAAGAACAAGGCGTAGAGAAGAAGGAAGGGGCTGATAATTCGAAGCAGCGCCAATCCCAGGAGCAGGCTCGAAGGAAGAAGATGTCTCGGGCTCAAGACGGCATCCTGAAATATATGTTGAAAATGATGGAGGTCTGCAAAGCTCAAGGTTTCGTTTATGGGATCATTCCTGAGAAGGGAAAGCCAGTGAGTGGAGCTTCTGATAATCTTCGTGCCTGGTGGAAAGAAAAAGTCAGATTCGATAGAAATGGCCCTGCAGCCATTGCTAAATATCAGGCTGACCATGCAATTCCTGGGTCGAACGATGACTTCAATACAGTGACCTCCACTCCTCACACTTTACAAGAGCTCCAAGACACGACCCTTGGGTCGCTTCTTTCGGCTCTGATGCAGCACTGTGATCCACCACAGCGGCGTTTTCCTCTTGAGAAGGGCGTTTCCCCACCGTGGTGGCCGAGTGGAAATGAGGAATGGTGGCCAGAATTGGGGCTACCCAAGAACCAGGGGCCTCCCCCATATAAGAAGCCCCATGATCTGAAGAAGGCTTGGAAGGTCAGCGTTCTCACGGCTGTGATTAAGCACATGTCGCCCGACATTGCCAAGATTCGCAAGCTTGTCCGTCAGTCTAAATGCTTGCAAGACAAGATGACTGCAAAGGAGAGTGCTACATGGCTGGCCATTATAAACCAGGAAGAAACCTTCGCCAGGAAATTGTATCCTGATAAATGCCCGCCTATGTCATCTGGTGGGAGCGGATCGATTCTAATCAGCGACACCAGTGATTACGACGTTGAAGGAGCAGACAATGAACCAAATTTGGAAATAGAAGAAAGCAAGCCTCATGATTTCAATTTCTTTAATATGGGGGAGAGGCTTATGATGTCACCAGTGGGACCACATCAGATCAAGGAAGAACTCATGGAGAACAATTCAGACATTATTCAAAAGAGGAAGCAGATGACTGAGGAGTCGAATACAATGAGGATTCAGAAAGTATATACTTGCGAGTATTCTCCATGTCCGTATAACAGTTCGCGTCTCGGGTTTCTCGACAGGACTTCAAGAAACAACCACCAGTTAAATTGCCCATATAGGAGTGAATCTTCCCATGTATTTGCCATGCCAAGCTTTCAAACCAACAATGATAAGTCATCCCCAGTTCCTCCATCCTTTAATCACTCCAAGCCTCCTACTCAGCCAATGAACCCGACTCCGCCTTACTTGGTTTCAGAACTCGGACTTCCCGAAGATGACCGGAAAATGATCGCTGACCTTCTGAATTTCTACGATTCGAACCATCAACCGGGTAAAAATTTGAACTCCGGGAACGTCGAAGCAAGAGACGATCACAATCAACAGCTCCCACAATTCCAACTCCAAGTAAACAATAACTTGTATCCTCAAGGAGCAATGGTGGGGGAAAACAATAGCATGCCGATGCAGCACCCTGATTTTTCTTCCTCAAAAGCCCCATTCGACGAATTCAAGGCATTTGATTCACCCTTCGACATGTATCCCAACGATAACCTTCCCGACTTCAGATTTAGTTCTCCATTTAACATGACATCAATTGATTATCCTGACACACCATTGCCGAAGCAAGATACACAGTTGTGGTATCTTTGA 1827 46.52 MMNTMGIFEDFGFCPNFEYFSAPPEEQETAREHEADATLEEDYSDEEMDVDELERRMWRDRLLLRRLKEQGVEKKEGADNSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVSGASDNLRAWWKEKVRFDRNGPAAIAKYQADHAIPGSNDDFNTVTSTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVSPPWWPSGNEEWWPELGLPKNQGPPPYKKPHDLKKAWKVSVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEETFARKLYPDKCPPMSSGGSGSILISDTSDYDVEGADNEPNLEIEESKPHDFNFFNMGERLMMSPVGPHQIKEELMENNSDIIQKRKQMTEESNTMRIQKVYTCEYSPCPYNSSRLGFLDRTSRNNHQLNCPYRSESSHVFAMPSFQTNNDKSSPVPPSFNHSKPPTQPMNPTPPYLVSELGLPEDDRKMIADLLNFYDSNHQPGKNLNSGNVEARDDHNQQLPQFQLQVNNNLYPQGAMVGENNSMPMQHPDFSSSKAPFDEFKAFDSPFDMYPNDNLPDFRFSSPFNMTSIDYPDTPLPKQDTQLWYL 608
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3311908 3315585 + Sed0007475.1 Sed03g0538 706025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0538 608 Gene3D - 176 309 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed03g0538 608 PANTHER ETHYLENE INSENSITIVE 3-LIKE 2 PROTEIN 14 603 IPR006957 GO:0003677(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(InterPro)
Sed03g0538 608 MobiDBLite consensus disorder prediction 72 95 - -
Sed03g0538 608 FunFam Ethylene insensitive 3-like 1 172 309 - -
Sed03g0538 608 SUPERFAMILY DNA-binding domain of EIN3-like 178 302 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
Sed03g0538 608 Coils Coil 36 70 - -
Sed03g0538 608 Coils Coil 370 390 - -
Sed03g0538 608 Pfam Ethylene insensitive 3, DNA-binding domain 51 299 IPR047091 GO:0003700(InterPro)
Sed03g0538 608 FunFam Ethylene insensitive 3-like 1 84 162 - -
Sed03g0538 608 MobiDBLite consensus disorder prediction 24 50 - -
Sed03g0538 608 MobiDBLite consensus disorder prediction 443 470 - -
Sed03g0538 608 Gene3D - 84 164 IPR023278 GO:0003700(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0538 Sed-Chr3:3311908 Sed12g1623 Sed-Chr12:27273232 1.20E-188 dispersed
Sed11g1403 Sed-Chr11:29994556 Sed03g0538 Sed-Chr3:3311908 2.1e-310 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
37754 PF04873 EIN3 1.10E-130 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0538 K14514 - csv:101214396 1012.68