Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0542 ATGGAGAAGTGCCATGTTTATTCCCTCCATTTCCTGTTGATCTTTATCTTCGTTTCGGGTCTTTTTGTTCCAACGCTGCCTCTCCCGATCGAGACTCAAGCATTGCTTCGTTTCAAAGAGAATCTCAAAGACCCTTCGGGTTTCCTTCATTCTTGGGTTGAATCTGAATCCCCTTGTGGATTCTCCGGGGTTACCTGCAATCGGGTTTCCGGGAAAGTTGTAGAGATTTCCTTGGAAAACAAGTCGCTTTCGGGTGAGATTTCTCCCTCCATTTCTGCTATGGAAAGTCTCACAACACTCTCAGTGGCCTCAAACAACATTTCTGGGGTGCTTCCCTACCAACTAATCAACTGCAGCAATCTTAGAGTGTTGAATCTCACTGATAATGTAATGGTTGGGAGGATTCCGGATCTTTCTCAGCTGAGAAATTTGGAGGTTCTAGATCTATCAATCAACTTCTTTTCTGGCCAATTCCCAATCTGGGTTGGAAATTTAACTGGTTTGGTTTCTCTAGGACTTGGTGAAAATGAGTTTGAGCCTGGTGAAATACCAGAATCTATGGGAAATTTGAAGAGCTTAACTTGGTTATATCTAGCAAATGCATATTTGAGAGGGGAAATACCAGAGTCTCTCTTTGAATTGAAGGCATTAGAGACCTTGGATGTTTCAAGGAACAAGATTTCTGGTAAACTCTCCAAGTCAATATCCAAGTTGCAGAATCTGAATAAGCTCGAGCTTTTTGTTAACCATTTGACTGGAGAAATCCCACCAGAGATTTCAAACCTATCTCTTCTGCAAGAAATTGATATTTCCGTAAATAGTTTTTATGGGGAGTTGCCGGAAGAGGTTGGGAACCTGAGGAACTTGGTGGTTTTTCAGTCTTATGAAAACAGCTTCTCTGGACAGCTTCCTGAAGGATTTGGAAATATGCAGAATCTTACTGCACTTTCAATCTATAGGAACAACTTTTCTGGGGAATTTCCTGTGAATCTCGGCAGATTCGCACCGCTCAATAGCATCGACATATCTGAGAATCAATTTTCAGGGAATTTCCCCAAGTTCCTGTGTGAGAATAGGAAGTTGAAATTCTTACTTGCTCTGGAAAATAGATTTTCAGGGGAGCTGCCAGTTTCTTTAGCTGAATGCAAATCACTGGAAAGGTTCAGAATTAGCAATAATCAAATGTCTGAAAGGATTCCAGATGGGTTATGGGCTCTTCCAAAGGCAAAACTGATTGATTTTAGTGACAATGAATTCTCTGGAGTTATATCCCCAAACATTGGTTTATCTACCAGCTTGAGCCAATTGATTTTGCTGAATAACAAACTTTCAGGTAAGCTTCCATCAGAGCTTGGAAAGCTGACAAATTTAGAGAAACTTTACTTGAGTAATAATGACTTCAAAGGAGAAATACCTTCAGAAATTGGTTCTCTCAAGCAACTTTCATCACTACATCTGGAAGTAAACTCTTTGAATGGATCAATCCCACTGGAGATTGGTAATTGTGAAAGACTTGTGGACATAAATTTTGCTCAAAACTCTCTCAGTGGTAGCATTCCATCTTCAGTTTCATCAATTAGCTCTTTGAACTCTCTGAATCTCTCACGCAACAAACTTACAGGTATAATACCAGATTACTTGGAGAAAATGAAACTAAGTTCGATTGATTTGTCGGGAAATCAGCTGTTCGGAAGAGTTCCATCCAGTCTTCTGGCAATGAGTGGGGACAAAGCATTTTTGGACAACAAAGAGCTCTGTGTTGATGAAAACTACAGAGAAAGGATAAAAACAAGCCTGATTACTTGTACTGGAAAGCATAGTCAGAAAGGGGTGCTTGAGGATAAACTTGTGTTTTTCAGTATCATAGTCTCCATCTTGGTTTGTGTATTAGCAGGGCTAGTGTTGGTAAGTTGTAATTACTTGAATCGAAGTGAGACTGGCTTAGTAACCAGTAAGGAAGGGGACCAACAAGGAGGTTCAAAATGGAAAATTGCATCATTCCATCAGATGGAAATTGATGCAGATGAAATAGGCAACTTTGAAGAAGACAATTTGATAGGGAGTGGAGGAACCGGAAAAGTTTATCGGTTGGATCTGAAGAAAAATGGTGGCACGGTGGCTGTTAAGCAGCTCTGGAAAGGAGATGCAATGAAGGTGTTGGCAGCAGAAATGGATATCTTGGGGAAGATAAGGCATAAAAACATCTTGAAGCTATATGCCTGCGTAATGCGAGAAGGAGCGAGTTACCTAGTTTTTGAATACATGAGTGGTGGAAACCTGAGTGAAGCACTTCAAAGACAGATCAAAGATGGACAGCCTGAATTGAACTGGAACCAGAGGTACAGGATTGCCTTGGGAGCAGCAAGGGGAATTGCTTACTTGCACCATGATTCTTCACCACCTATAATTCATAGAGATATAAAATCAACAAACATACTTCTTGATGGAGATTATGAACCAAAAATTGCTGATTTTGGGGTTGCAAAAGTTTCAGATCAGTTTCAAAGTGTTTCTGAGAACAGCTCTCTTGCTGGCACACATGGTTATATTGCCCCCGAGCTAGCATATACTCCAAAAGTTTCAGAAAAGAGTGATGTGTACAGTTATGGTGTGGTGCTATTAGAGTTGATTACTGGTAGGAGACCAATTGAAGATGAATACGGAGAAGGAAAAGATATTGTCTACTGGGTCACAACACACCTCGATGATCGTGATAATGTCCTCAAGCTTCTAGACATCAAAGTTGCATCCGAAGCCGTCCAAAATGACATGATTAAAGTCCTGAAGATTGCTGTACTTTGCACAACAAAGCTTCCATCACTTCGCCCTTCAATGAGAGAGGTAGTGAAGATGCTGTTAGACGCTGATCCTTACTCCTCTTCAATGTCCCTGAACAACAGTTCAAATAAAAACATGAAGGATTTTGTTTAG 2931 40.6 MEKCHVYSLHFLLIFIFVSGLFVPTLPLPIETQALLRFKENLKDPSGFLHSWVESESPCGFSGVTCNRVSGKVVEISLENKSLSGEISPSISAMESLTTLSVASNNISGVLPYQLINCSNLRVLNLTDNVMVGRIPDLSQLRNLEVLDLSINFFSGQFPIWVGNLTGLVSLGLGENEFEPGEIPESMGNLKSLTWLYLANAYLRGEIPESLFELKALETLDVSRNKISGKLSKSISKLQNLNKLELFVNHLTGEIPPEISNLSLLQEIDISVNSFYGELPEEVGNLRNLVVFQSYENSFSGQLPEGFGNMQNLTALSIYRNNFSGEFPVNLGRFAPLNSIDISENQFSGNFPKFLCENRKLKFLLALENRFSGELPVSLAECKSLERFRISNNQMSERIPDGLWALPKAKLIDFSDNEFSGVISPNIGLSTSLSQLILLNNKLSGKLPSELGKLTNLEKLYLSNNDFKGEIPSEIGSLKQLSSLHLEVNSLNGSIPLEIGNCERLVDINFAQNSLSGSIPSSVSSISSLNSLNLSRNKLTGIIPDYLEKMKLSSIDLSGNQLFGRVPSSLLAMSGDKAFLDNKELCVDENYRERIKTSLITCTGKHSQKGVLEDKLVFFSIIVSILVCVLAGLVLVSCNYLNRSETGLVTSKEGDQQGGSKWKIASFHQMEIDADEIGNFEEDNLIGSGGTGKVYRLDLKKNGGTVAVKQLWKGDAMKVLAAEMDILGKIRHKNILKLYACVMREGASYLVFEYMSGGNLSEALQRQIKDGQPELNWNQRYRIALGAARGIAYLHHDSSPPIIHRDIKSTNILLDGDYEPKIADFGVAKVSDQFQSVSENSSLAGTHGYIAPELAYTPKVSEKSDVYSYGVVLLELITGRRPIEDEYGEGKDIVYWVTTHLDDRDNVLKLLDIKVASEAVQNDMIKVLKIAVLCTTKLPSLRPSMREVVKMLLDADPYSSSMSLNNSSNKNMKDFV 976
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3334781 3337992 - Sed0002357.1 Sed03g0542 706029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0542 976 SUPERFAMILY RNI-like 255 569 - -
Sed03g0542 976 FunFam Receptor-like protein kinase HSL1 292 594 - -
Sed03g0542 976 FunFam Leucine-rich receptor-like protein kinase family protein 670 754 - -
Sed03g0542 976 FunFam Leucine-rich repeat receptor protein kinase EMS1 207 291 - -
Sed03g0542 976 ProSiteProfiles Protein kinase domain profile. 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0542 976 Pfam Leucine Rich Repeat 143 165 IPR001611 GO:0005515(InterPro)
Sed03g0542 976 Pfam Leucine Rich Repeat 456 478 IPR001611 GO:0005515(InterPro)
Sed03g0542 976 Pfam Leucine Rich Repeat 217 238 IPR001611 GO:0005515(InterPro)
Sed03g0542 976 Pfam Leucine Rich Repeat 528 550 IPR001611 GO:0005515(InterPro)
Sed03g0542 976 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 755 970 - -
Sed03g0542 976 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed03g0542 976 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Sed03g0542 976 Gene3D Ribonuclease Inhibitor 283 368 IPR032675 -
Sed03g0542 976 Gene3D Ribonuclease Inhibitor 369 471 IPR032675 -
Sed03g0542 976 Gene3D Ribonuclease Inhibitor 472 593 IPR032675 -
Sed03g0542 976 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 327 954 IPR051564 GO:0016020(PANTHER)
Sed03g0542 976 ProSiteProfiles Leucine-rich repeat profile. 120 142 IPR001611 GO:0005515(InterPro)
Sed03g0542 976 SMART serkin_6 680 959 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0542 976 SUPERFAMILY L domain-like 55 291 - -
Sed03g0542 976 Gene3D Phosphorylase Kinase; domain 1 651 754 - -
Sed03g0542 976 Gene3D Ribonuclease Inhibitor 183 282 IPR032675 -
Sed03g0542 976 Gene3D Ribonuclease Inhibitor 29 182 IPR032675 -
Sed03g0542 976 Pfam Protein kinase domain 681 950 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed03g0542 976 SMART LRR_typ_2 526 549 IPR003591 -
Sed03g0542 976 SMART LRR_typ_2 238 262 IPR003591 -
Sed03g0542 976 SMART LRR_typ_2 454 478 IPR003591 -
Sed03g0542 976 SMART LRR_typ_2 190 214 IPR003591 -
Sed03g0542 976 SMART LRR_typ_2 94 117 IPR003591 -
Sed03g0542 976 FunFam Probable inactive receptor kinase RLK902 28 186 - -
Sed03g0542 976 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524(InterPro)
Sed03g0542 976 Gene3D Transferase(Phosphotransferase) domain 1 755 973 - -
Sed03g0542 976 SUPERFAMILY Protein kinase-like (PK-like) 672 952 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g0542 Sed-Chr3:3334781 Sed03g1443 Sed-Chr3:9248057 9.90E-73 dispersed
Sed03g0542 Sed-Chr3:3334781 Sed05g1525 Sed-Chr5:28939541 3.40E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78865 PF00069 Pkinase 2.70E-48 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0542 - - - 0.0