Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed03g0544 ATGCTTTTGAAGCCATTCAACTCCGTCGCCGTCGTCTTCATGCTAGCTTTCGCATTCTTCGTCCTCTTCTTCACCGGCTTCCTCGAATTTCCACCGCCATCCACTTCCATACTACCGCCCACCGACGATCTGAATTTCTCAGCGGCTGAGTCTACACCAGAACCTTTCGCCGATTTGATCGCCGCTTTCAAGAAATGGGACTCTCAGGTCGGCTGCGATCGATTCCGGGAGAAAATCGGCGGCGGTTTGGGTAATAGGTCTTCTTCGTCTTCATCGCTGCAGCAACCTAGTTCGGAATGCGCGGGGCTGAAATTGAATCACGTTTCTGTTTTGGTGAAAGGCTGGACTTGGATTCCTGATAATTTAGAGAATTTGTATCCGTGTTCTTGCGGATTGAGCTGTCTTTGGACTAAATCTTCTGTTCTTGCCGATAAACCTGACGCCTTGTTCTTCGAGACCAGTACGCCTCCACGGCAGAGGCGCAGGGGAGATCCTCTTCGCATATATATGGATCTCGAGGCTGGTCGGAAACGCTCGGGTTTTGAGGATCTATTTGTTAGTTATCATGCAGAAGATGATGTTCAGTCAACTTATGCTGGAGCACTTTTTCACAATGGTCGAAACTATCATGTATCTTCTTCCAAAAACAACGATACGCTCGTTTATTGGTCGTCGTCCCGATGTCTTCCCCAAAGAAACCAGCTTGCTAAAAAGCTTCTAAGCTTGCTGCCTCACCATTCATTTGGCAAGTGCTTGAACAATGTAGGCGGACTCGACATGGCTCTTTCTATGTACCCTGAATGTGCAAACGATGCCAGCGTCACCCCAAAATGGTGGGATCACTTGCATTGTGCAATGTCTCAATACAAATTCGTTCTCGCGATCGAAAACACCATGACCGAGAGTTACGTTACAGAGAAGCTATTTTATGCGCTAGACTCTGGTTCGGTTCCAATTTATTTTGGTGCCCCTAATGTCTGGGACTTCATCCCTCCACATTCTATAATTGATGGGTCTAAATTCAGCTCCTTGGAAGAGTTAGCATCTTATGTAAAGCGACTTGCCAATGACCCGGTAGCTTATGCTGAGTACCATGCCTGGAGACGATGCGGTGCATTGGGTAACTATGGAAGGACCCGCGCTGCAAGCCTCGACACGCTGCCGTGCCGGGTGTGTGATGCTGTGAGTAGAAAGGGTGGTAGAAATGCTTGA 1212 48.27 MLLKPFNSVAVVFMLAFAFFVLFFTGFLEFPPPSTSILPPTDDLNFSAAESTPEPFADLIAAFKKWDSQVGCDRFREKIGGGLGNRSSSSSSLQQPSSECAGLKLNHVSVLVKGWTWIPDNLENLYPCSCGLSCLWTKSSVLADKPDALFFETSTPPRQRRRGDPLRIYMDLEAGRKRSGFEDLFVSYHAEDDVQSTYAGALFHNGRNYHVSSSKNNDTLVYWSSSRCLPQRNQLAKKLLSLLPHHSFGKCLNNVGGLDMALSMYPECANDASVTPKWWDHLHCAMSQYKFVLAIENTMTESYVTEKLFYALDSGSVPIYFGAPNVWDFIPPHSIIDGSKFSSLEELASYVKRLANDPVAYAEYHAWRRCGALGNYGRTRAASLDTLPCRVCDAVSRKGGRNA 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3356839 3360365 + Sed0027152.1 Sed03g0544 706031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed03g0544 403 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 106 397 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)|GO:0036065(PANTHER)|GO:0046920(PANTHER)
Sed03g0544 403 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 217 398 IPR001503 GO:0006486(InterPro)|GO:0008417(InterPro)|GO:0016020(InterPro)
Sed03g0544 403 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 95 397 - -
Sed03g0544 403 FunFam Alpha-(1,4)-fucosyltransferase 167 373 - -
Sed03g0544 403 PIRSF FucT_plant 1 403 IPR017177 -
Sed03g0544 403 Gene3D - 168 373 IPR038577 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed03g0544 K14412 - - csv:101216230 712.99
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed07g1952 . 96 563 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 1.7e-154 543.9
Sed01g2333 . 109 578 Xyloglucan Fucosyltransferase1 AT1G14080 55.6 8.3e-154 541.6
Sed06g1510 . 78 547 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 1.0e-151 534.6
Sed07g1952 . 96 565 Xyloglucan Fucosyltransferase1 AT1G14100 59.1 2.0e-165 580.1
Sed06g1510 . 70 547 Xyloglucan Fucosyltransferase1 AT1G14100 59.2 2.0e-165 580.1
Sed01g2333 . 111 578 Xyloglucan Fucosyltransferase1 AT1G14100 59.5 3.6e-162 569.3
Sed06g1510 . 67 546 Xyloglucan Fucosyltransferase1 AT1G14110 52.8 5.1e-139 492.3
Sed07g1952 . 97 566 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 6.2e-137 485.3
Sed01g2333 . 97 581 Xyloglucan Fucosyltransferase1 AT1G14110 50.6 1.6e-132 470.7
Sed10g2027 . 3 506 Xyloglucan Fucosyltransferase1 AT1G49710 64.5 1.3e-188 657.1
Sed13g0494 . 2 519 Xyloglucan Fucosyltransferase1 AT1G49710 61.5 7.1e-179 624.8
Sed03g0544 . 7 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 1.4e-166 583.6
Sed01g2333 . 44 550 Xyloglucan Fucosyltransferase1 AT1G74420 50.3 2.0e-134 477.2
Sed06g1510 . 76 518 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 1.3e-125 448.0
Sed07g1952 . 93 535 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.2e-124 443.4
Sed07g1952 . 4 564 Xyloglucan Fucosyltransferase1 AT2G03210 54.7 7.9e-179 624.8
Sed06g1510 . 12 546 Xyloglucan Fucosyltransferase1 AT2G03210 55.3 2.4e-175 613.2
Sed01g2333 . 8 580 Xyloglucan Fucosyltransferase1 AT2G03210 52.1 4.3e-169 592.4
Sed07g1952 . 31 562 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 9.7e-198 687.6
Sed06g1510 . 31 545 Xyloglucan Fucosyltransferase1 AT2G03220 62.6 1.0e-191 667.5
Sed01g2333 . 56 577 Xyloglucan Fucosyltransferase1 AT2G03220 60.5 5.3e-188 655.2
Sed13g0692 . 55 546 Xyloglucan Fucosyltransferase1 AT2G03220 51.1 3.6e-144 509.6
Sed07g1952 . 97 563 Xyloglucan Fucosyltransferase1 AT2G15350 54.3 2.3e-153 540.0
Sed06g1510 . 79 546 Xyloglucan Fucosyltransferase1 AT2G15350 54.1 1.2e-149 527.7
Sed01g2333 . 102 580 Xyloglucan Fucosyltransferase1 AT2G15350 51.4 6.7e-145 511.9
Sed07g1952 . 97 564 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 2.6e-147 520.0
Sed06g1510 . 79 547 Xyloglucan Fucosyltransferase1 AT2G15370 52.0 3.8e-143 506.1
Sed01g2333 . 102 580 Xyloglucan Fucosyltransferase1 AT2G15370 50.7 6.7e-140 495.4
Sed07g1952 . 85 564 Xyloglucan Fucosyltransferase1 AT2G15390 53.8 1.3e-151 534.3
Sed06g1510 . 70 547 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 8.3e-146 515.0
Sed01g2333 . 111 579 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 4.1e-145 512.7
Sed10g2027 . 5 506 Xyloglucan Fucosyltransferase1 AT3G19280 64.0 1.2e-186 650.6
Sed13g0494 . 2 519 Xyloglucan Fucosyltransferase1 AT3G19280 62.1 6.3e-180 628.2
Sed01g2333 . 44 550 Xyloglucan Fucosyltransferase1 AT1G74420 50.3 2.0e-134 477.2
Sed06g1510 . 76 518 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 1.3e-125 448.0
Sed07g1952 . 93 535 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.2e-124 443.4
Sed07g1952 . 4 564 Xyloglucan Fucosyltransferase1 AT2G03210 54.7 7.9e-179 624.8
Sed06g1510 . 12 546 Xyloglucan Fucosyltransferase1 AT2G03210 55.3 2.4e-175 613.2
Sed01g2333 . 8 580 Xyloglucan Fucosyltransferase1 AT2G03210 52.1 4.3e-169 592.4
Sed07g1952 . 31 562 Xyloglucan Fucosyltransferase1 AT2G03220 62.9 9.7e-198 687.6
Sed06g1510 . 31 545 Xyloglucan Fucosyltransferase1 AT2G03220 62.6 1.0e-191 667.5
Sed01g2333 . 56 577 Xyloglucan Fucosyltransferase1 AT2G03220 60.5 5.3e-188 655.2
Sed13g0692 . 55 546 Xyloglucan Fucosyltransferase1 AT2G03220 51.1 3.6e-144 509.6
Sed07g1952 . 4 564 Xyloglucan Fucosyltransferase1 AT2G03210 54.7 7.9e-179 624.8
Sed06g1510 . 12 546 Xyloglucan Fucosyltransferase1 AT2G03210 55.3 2.4e-175 613.2
Sed01g2333 . 8 580 Xyloglucan Fucosyltransferase1 AT2G03210 52.1 4.3e-169 592.4
Sed01g2333 . 44 550 Xyloglucan Fucosyltransferase1 AT1G74420 50.3 2.0e-134 477.2
Sed06g1510 . 76 518 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 1.3e-125 448.0
Sed07g1952 . 93 535 Xyloglucan Fucosyltransferase1 AT1G74420 50.7 3.2e-124 443.4
Sed07g1952 . 85 564 Xyloglucan Fucosyltransferase1 AT2G15390 53.8 1.3e-151 534.3
Sed06g1510 . 70 547 Xyloglucan Fucosyltransferase1 AT2G15390 52.3 8.3e-146 515.0
Sed01g2333 . 111 579 Xyloglucan Fucosyltransferase1 AT2G15390 53.2 4.1e-145 512.7
Sed07g1952 . 97 564 Xyloglucan Fucosyltransferase1 AT2G15370 53.3 2.6e-147 520.0
Sed06g1510 . 79 547 Xyloglucan Fucosyltransferase1 AT2G15370 52.0 3.8e-143 506.1
Sed01g2333 . 102 580 Xyloglucan Fucosyltransferase1 AT2G15370 50.7 6.7e-140 495.4
Sed07g1952 . 96 563 Xyloglucan Fucosyltransferase1 AT1G14080 55.4 1.7e-154 543.9
Sed01g2333 . 109 578 Xyloglucan Fucosyltransferase1 AT1G14080 55.6 8.3e-154 541.6
Sed06g1510 . 78 547 Xyloglucan Fucosyltransferase1 AT1G14080 54.6 1.0e-151 534.6
Sed07g1952 . 96 565 Xyloglucan Fucosyltransferase1 AT1G14100 59.1 2.0e-165 580.1
Sed06g1510 . 70 547 Xyloglucan Fucosyltransferase1 AT1G14100 59.2 2.0e-165 580.1
Sed01g2333 . 111 578 Xyloglucan Fucosyltransferase1 AT1G14100 59.5 3.6e-162 569.3
Sed06g1510 . 67 546 Xyloglucan Fucosyltransferase1 AT1G14110 52.8 5.1e-139 492.3
Sed07g1952 . 97 566 Xyloglucan Fucosyltransferase1 AT1G14110 53.3 6.2e-137 485.3
Sed01g2333 . 97 581 Xyloglucan Fucosyltransferase1 AT1G14110 50.6 1.6e-132 470.7
Sed07g1952 . 97 563 Xyloglucan Fucosyltransferase1 AT2G15350 54.3 2.3e-153 540.0
Sed06g1510 . 79 546 Xyloglucan Fucosyltransferase1 AT2G15350 54.1 1.2e-149 527.7
Sed01g2333 . 102 580 Xyloglucan Fucosyltransferase1 AT2G15350 51.4 6.7e-145 511.9
Sed10g2027 . 5 506 Xyloglucan Fucosyltransferase1 AT3G19280 64.0 1.2e-186 650.6
Sed13g0494 . 2 519 Xyloglucan Fucosyltransferase1 AT3G19280 62.1 6.3e-180 628.2
Sed10g2027 . 3 506 Xyloglucan Fucosyltransferase1 AT1G49710 64.5 1.3e-188 657.1
Sed13g0494 . 2 519 Xyloglucan Fucosyltransferase1 AT1G49710 61.5 7.1e-179 624.8
Sed03g0544 . 7 403 Xyloglucan Fucosyltransferase1 AT1G71990 69.8 1.4e-166 583.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010578 1 1 1 1 1 1 2 1 1 0 0 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 1 1 1 32